Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 AC136628.3-201ENST00000521868 290 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 AC004817.2-201ENST00000561794 651 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.27□□□□□ -2.05
NUP88Q99567 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.26□□□□□ -2.05
NUP88Q99567 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
NUP88Q99567 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
NUP88Q99567 RNU6-1048P-201ENST00000364054 107 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 Y_RNA.477-201ENST00000384352 108 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 MIR583-201ENST00000384846 75 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 RNU6-482P-201ENST00000391068 107 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 MIR548H3-201ENST00000408771 118 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 COX6CP10-201ENST00000416832 224 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 AL445685.2-201ENST00000422551 342 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 AL603825.1-201ENST00000438481 80 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 RNU7-34P-201ENST00000459394 64 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 RPL36AP21-201ENST00000490372 323 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 AC117454.1-201ENST00000491120 168 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 Y_RNA.668-201ENST00000516233 93 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 SNORA31.17-201ENST00000516953 127 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 AL773524.1-201ENST00000614065 229 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 AL353997.5-201ENST00000618886 171 ntBASIC2.26□□□□□ -2.05
NUP88Q99567 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
NUP88Q99567 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
NUP88Q99567 Y_RNA.14-201ENST00000362415 103 ntBASIC2.25□□□□□ -2.05
NUP88Q99567 AC244636.1-201ENST00000421152 228 ntBASIC2.25□□□□□ -2.05
NUP88Q99567 AL135790.2-201ENST00000437701 267 ntBASIC2.25□□□□□ -2.05
NUP88Q99567 Y_RNA.679-201ENST00000516416 91 ntBASIC2.25□□□□□ -2.05
NUP88Q99567 RNA5SP437-201ENST00000517249 129 ntBASIC2.25□□□□□ -2.05
NUP88Q99567 POLR3GP1-201ENST00000594073 261 ntBASIC2.25□□□□□ -2.05
NUP88Q99567 AC022217.4-201ENST00000604389 163 ntBASIC2.25□□□□□ -2.05
NUP88Q99567 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.25□□□□□ -2.05
NUP88Q99567 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.25□□□□□ -2.05
NUP88Q99567 AC134026.1-201ENST00000623249 2239 ntBASIC2.25□□□□□ -2.05
NUP88Q99567 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
NUP88Q99567 SNORD27-201ENST00000363981 72 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 SNORA63D-201ENST00000364359 132 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 SNORA72.4-201ENST00000384174 132 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 RNU6-950P-201ENST00000384651 107 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
NUP88Q99567 RNU6-763P-201ENST00000390865 106 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 SNORA26.9-201ENST00000391322 122 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 AC019129.1-201ENST00000403786 261 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 HSPE1P9-201ENST00000440046 311 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 AL606517.2-201ENST00000442855 241 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 RPS4XP11-201ENST00000446897 772 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.24□□□□□ -2.05
NUP88Q99567 RPL23AP54-201ENST00000495129 419 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 RNA5SP481-201ENST00000516814 122 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 RNU7-116P-201ENST00000516940 62 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 RNU6-341P-201ENST00000516973 96 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 MIR4299-201ENST00000577899 72 ntBASIC2.24□□□□□ -2.05
NUP88Q99567 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.24□□□□□ -2.05
NUP88Q99567 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.24□□□□□ -2.05
NUP88Q99567 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
NUP88Q99567 ZNF355P-201ENST00000427301 3216 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 RNU6-1272P-201ENST00000362776 107 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 Y_RNA.265-201ENST00000364677 108 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 Y_RNA.350-201ENST00000365409 98 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 Y_RNA.352-201ENST00000365439 102 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 Y_RNA.401-201ENST00000383965 117 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 RNU4-52P-201ENST00000384209 138 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 RNU6-1289P-201ENST00000384431 106 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 RNU6-296P-201ENST00000384608 107 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 AL603910.2-201ENST00000407268 136 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 Y_RNA.590-201ENST00000410140 107 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 RNU7-141P-201ENST00000459304 62 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 RNA5SP364-201ENST00000516938 78 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 AC011604.1-201ENST00000545978 196 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.23□□□□□ -2.05
NUP88Q99567 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.23□□□□□ -2.05
NUP88Q99567 MIR548AY-201ENST00000617669 107 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.23□□□□□ -2.05
NUP88Q99567 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
NUP88Q99567 Y_RNA.117-201ENST00000363294 101 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 RNU6-801P-201ENST00000364087 105 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 Y_RNA.275-201ENST00000364726 110 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 Y_RNA.277-201ENST00000364754 102 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 SNORA4.2-201ENST00000365313 147 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
NUP88Q99567 SNORA26.5-201ENST00000391215 123 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 RNU2-14P-201ENST00000411053 191 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 AC104332.1-201ENST00000440471 797 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.22□□□□□ -2.05
NUP88Q99567 RPS27P21-201ENST00000486977 252 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 AP002004.2-201ENST00000531656 154 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 AC024405.2-202ENST00000532731 184 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 MIR4709-201ENST00000577272 72 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 AL162424.1-201ENST00000602325 221 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 MIR8054-201ENST00000620877 86 ntBASIC2.22□□□□□ -2.05
NUP88Q99567 RNU6-899P-201ENST00000363947 107 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 RNU6-740P-201ENST00000364734 105 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 U8.7-201ENST00000364940 136 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 SNORA72-201ENST00000384339 132 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 RN7SKP200-201ENST00000410564 320 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 STAG3L5P-204ENST00000443759 179 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 snoU13.27-201ENST00000459278 104 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms