Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RNU6-163P-201ENST00000384396 106 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 MIR222-201ENST00000384992 110 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 AL390729.2-201ENST00000416137 156 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 RPS4XP11-201ENST00000446897 772 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 RNU6-917P-201ENST00000516294 104 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 MIR548S-201ENST00000581352 82 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 AL117336.2-201ENST00000602435 335 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 AC120024.3-201ENST00000603167 156 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 AL022345.2-201ENST00000606307 135 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 BX284668.6-201ENST00000606899 438 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 AC027279.3-201ENST00000625055 122 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 MIR4272-201ENST00000635924 64 ntBASIC1.42□□□□□ -2.18
SKA1Q96BD8 Y_RNA.39-201ENST00000362620 98 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 MIR518E-201ENST00000385252 88 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 SNORD41-201ENST00000386967 70 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 RNU6-710P-201ENST00000410424 105 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 RPEP5-201ENST00000441137 268 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 U8.19-201ENST00000459095 133 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 AL133373.1-201ENST00000497098 94 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 Y_RNA.661-201ENST00000516003 99 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 RNU6-947P-201ENST00000516264 106 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 Y_RNA.702-201ENST00000516843 96 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 SNORA70.22-201ENST00000517160 124 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.41□□□□□ -2.18
SKA1Q96BD8 AC011604.1-201ENST00000545978 196 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 AC022441.3-201ENST00000605737 136 ntBASIC1.41□□□□□ -2.18
SKA1Q96BD8 RNU6-1080P-201ENST00000383982 107 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 RNU6-708P-201ENST00000384217 107 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 Y_RNA.529-201ENST00000384586 119 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
SKA1Q96BD8 RNU6-1199P-201ENST00000411249 104 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 AC104332.1-201ENST00000440471 797 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 SNORA31.2-201ENST00000516019 134 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 RNU6-436P-201ENST00000516171 114 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 AC068338.1-201ENST00000565567 176 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 RPS29P30-201ENST00000600975 111 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 Y_RNA.772-201ENST00000606692 102 ntBASIC1.4□□□□□ -2.19
SKA1Q96BD8 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.4□□□□□ -2.19
SKA1Q96BD8 SNORA70.7-201ENST00000384159 133 ntBASIC1.39□□□□□ -2.19
SKA1Q96BD8 SNORD116-13-201ENST00000384408 92 ntBASIC1.39□□□□□ -2.19
SKA1Q96BD8 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.39□□□□□ -2.19
SKA1Q96BD8 AC005042.3-201ENST00000453230 174 ntBASIC1.39□□□□□ -2.19
SKA1Q96BD8 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.39□□□□□ -2.19
SKA1Q96BD8 HMGN1P7-201ENST00000491722 313 ntBASIC1.39□□□□□ -2.19
SKA1Q96BD8 AC005972.2-201ENST00000604690 348 ntBASIC1.39□□□□□ -2.19
SKA1Q96BD8 MIR6504-201ENST00000613520 61 ntBASIC1.39□□□□□ -2.19
SKA1Q96BD8 AC091895.1-201ENST00000624494 256 ntBASIC1.39□□□□□ -2.19
SKA1Q96BD8 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
SKA1Q96BD8 RNU6-1115P-201ENST00000362490 106 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 RNU6-1175P-201ENST00000365200 107 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 RNU1-115P-201ENST00000365329 160 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 RNU6-1054P-201ENST00000411293 104 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.38□□□□□ -2.19
SKA1Q96BD8 LINC01399-202ENST00000458450 244 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 RNU6-976P-201ENST00000516086 111 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 AC092447.9-201ENST00000603395 144 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 AC010205.1-201ENST00000616668 449 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 AC027335.2-201ENST00000624030 375 ntBASIC1.38□□□□□ -2.19
SKA1Q96BD8 Y_RNA.116-201ENST00000363292 103 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 Y_RNA.508-201ENST00000384502 114 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 Y_RNA.526-201ENST00000384572 110 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 Y_RNA.570-201ENST00000384750 101 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 MIR758-201ENST00000390227 88 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 MCFD2P1-201ENST00000417812 300 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 RPS29P29-201ENST00000456396 171 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 RNA5SP404-201ENST00000517118 132 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 RNU6-1116P-201ENST00000517269 99 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 FAM106DP-201ENST00000586416 501 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 AC004832.4-201ENST00000608952 331 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 AL591926.4-201ENST00000616895 298 ntBASIC1.37□□□□□ -2.19
SKA1Q96BD8 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.37□□□□□ -2.19
SKA1Q96BD8 RNU4-79P-201ENST00000362764 141 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 Y_RNA.122-201ENST00000363331 96 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 Y_RNA.224-201ENST00000364308 111 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 U8.5-201ENST00000364528 136 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 Y_RNA.252-201ENST00000364556 101 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 Y_RNA.462-201ENST00000384268 102 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 MIR452-201ENST00000385020 85 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 MIR1276-201ENST00000408707 83 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 PIGPP3-201ENST00000425307 415 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 AC024067.1-201ENST00000426199 223 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.36□□□□□ -2.19
SKA1Q96BD8 AL160004.2-201ENST00000432935 350 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 RNU1-123P-201ENST00000458950 160 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 AC048334.1-201ENST00000477975 159 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 SNORA40.14-201ENST00000516543 86 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 AL121655.1-201ENST00000605811 308 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 AC091925.1-201ENST00000623204 462 ntBASIC1.36□□□□□ -2.19
SKA1Q96BD8 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SKA1Q96BD8 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SKA1Q96BD8 Y_RNA.329-201ENST00000365209 107 ntBASIC1.35□□□□□ -2.19
SKA1Q96BD8 SNORA72-201ENST00000384339 132 ntBASIC1.35□□□□□ -2.19
SKA1Q96BD8 RNU6-910P-201ENST00000390844 107 ntBASIC1.35□□□□□ -2.19
SKA1Q96BD8 AC245047.7-201ENST00000440265 293 ntBASIC1.35□□□□□ -2.19
SKA1Q96BD8 AC114811.1-201ENST00000507207 168 ntBASIC1.35□□□□□ -2.19
SKA1Q96BD8 Y_RNA.713-201ENST00000517013 96 ntBASIC1.35□□□□□ -2.19
SKA1Q96BD8 MIR5188-201ENST00000583467 113 ntBASIC1.35□□□□□ -2.19
SKA1Q96BD8 MIR4762-201ENST00000585261 75 ntBASIC1.35□□□□□ -2.19
SKA1Q96BD8 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 207.1 ms