Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
RNFT1Q5M7Z0 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
RNFT1Q5M7Z0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.34□□□□□ -1.88
RNFT1Q5M7Z0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.34□□□□□ -1.88
RNFT1Q5M7Z0 IPO8P1-201ENST00000455509 3109 ntBASIC3.34□□□□□ -1.88
RNFT1Q5M7Z0 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.34□□□□□ -1.88
RNFT1Q5M7Z0 AC091564.4-201ENST00000533934 2194 ntBASIC3.34□□□□□ -1.88
RNFT1Q5M7Z0 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 RNU6-315P-201ENST00000362666 107 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 SNORD115-2-201ENST00000362842 82 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 snoU2-30.1-201ENST00000365012 70 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 SNORD115-20-201ENST00000365099 82 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 MIR218-2-201ENST00000385006 110 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 MIR34B-201ENST00000385076 84 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 Z98941.1-201ENST00000407764 100 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 AC093729.1-201ENST00000513074 128 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 AP000867.2-201ENST00000532468 320 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 MAPK10-362ENST00000641864 4484 ntBASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.33□□□□□ -1.88
RNFT1Q5M7Z0 AC073346.2-201ENST00000624724 2058 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 SNORA1B-201ENST00000362535 133 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 RNU6-524P-201ENST00000384270 107 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 RNVU1-14-201ENST00000384770 164 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 RNA5SP306-201ENST00000411087 107 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 AC090844.1-201ENST00000422019 156 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 CYCSP4-201ENST00000429682 331 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 AL161932.1-201ENST00000437408 146 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 RNU7-96P-201ENST00000459535 64 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 TRBV12-2-201ENST00000489763 344 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 RNU6-998P-201ENST00000515894 101 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 RNA5SP112-201ENST00000515937 99 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 SNORA31.4-201ENST00000516049 129 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 RNU6-539P-201ENST00000516665 103 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 SNORA70.18-201ENST00000516696 98 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 SCARNA3-201ENST00000517097 143 ntBASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.32□□□□□ -1.88
RNFT1Q5M7Z0 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 MIR342-201ENST00000362212 99 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 snoU2-30.2-201ENST00000362805 70 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 SNORD115-27-201ENST00000364430 82 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 SNORA27-201ENST00000384323 126 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 RNA5SP38-201ENST00000410750 119 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 AC060773.1-201ENST00000421698 310 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 CYCSP35-201ENST00000451978 304 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 SNORD105B-201ENST00000458770 79 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 RNU7-113P-201ENST00000459273 62 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 AC004223.1-201ENST00000479840 271 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 RNU6-586P-201ENST00000517265 104 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 MIR376B-201ENST00000614515 100 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 MIR1248-201ENST00000629190 106 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 AP000553.6-201ENST00000641242 118 ntBASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
RNFT1Q5M7Z0 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 RNU6-1084P-201ENST00000362498 107 ntBASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 SNORA9-201ENST00000384215 133 ntBASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 RPL23AP83-201ENST00000434984 473 ntBASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 MIR5047-201ENST00000579212 100 ntBASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 MIR4765-201ENST00000585007 77 ntBASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 U7.8-201ENST00000619968 63 ntBASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 MAPK10-322ENST00000641485 4530 ntBASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
RNFT1Q5M7Z0 SNORD68-201ENST00000363214 84 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 RNA5SP72-201ENST00000364442 117 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 MIR519C-201ENST00000385053 87 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 AC123900.1-201ENST00000420390 96 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 AC244505.4-201ENST00000434905 287 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 SSXP5-201ENST00000443473 287 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 AC090255.1-201ENST00000495779 349 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 RNU6-523P-201ENST00000516304 54 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 SNORD45.4-201ENST00000516629 73 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 AC140658.3-201ENST00000567603 271 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 AC008264.2-201ENST00000610193 3731 ntBASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
RNFT1Q5M7Z0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms