Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-496P-201ENST00000516145 99 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 RNU6-1337P-201ENST00000516525 95 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 RNU6-341P-201ENST00000516973 96 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.720-201ENST00000517166 92 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 MIR6079-201ENST00000635807 62 ntBASIC1.76□□□□□ -2.13
COL28A1Q2UY09 RNU4-90P-201ENST00000362773 141 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.105-201ENST00000363182 111 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.75□□□□□ -2.13
COL28A1Q2UY09 RNU6-738P-201ENST00000384531 106 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 RNU6-376P-201ENST00000384731 106 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 MIR520G-201ENST00000385064 90 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 MIR9-3-201ENST00000385084 90 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 RNA5SP109-201ENST00000391010 116 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 AC113618.1-201ENST00000416747 285 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 HMGN2P19-201ENST00000425149 265 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 HSPE1P25-201ENST00000455484 251 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 LINC01399-202ENST00000458450 244 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 snoU13.27-201ENST00000459278 104 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.75□□□□□ -2.13
COL28A1Q2UY09 AL358944.1-201ENST00000528537 144 ntBASIC1.75□□□□□ -2.13
COL28A1Q2UY09 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.75□□□□□ -2.13
COL28A1Q2UY09 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.19-201ENST00000362462 99 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.136-201ENST00000363444 102 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.383-201ENST00000383855 97 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 MIR676-201ENST00000390702 67 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.74□□□□□ -2.13
COL28A1Q2UY09 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.74□□□□□ -2.13
COL28A1Q2UY09 AC245047.3-201ENST00000429428 127 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 AL162725.1-201ENST00000435405 301 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.74□□□□□ -2.13
COL28A1Q2UY09 AC009474.2-201ENST00000451383 136 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 HMGN1P10-201ENST00000474557 553 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 HMGN1P7-201ENST00000491722 313 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 RNA5SP102-201ENST00000516865 106 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 SNORA44.1-201ENST00000517031 108 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 PRR13P7-201ENST00000605538 430 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 MIR6515-201ENST00000619843 57 ntBASIC1.74□□□□□ -2.13
COL28A1Q2UY09 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.36-201ENST00000362602 112 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.286-201ENST00000364813 102 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.368-201ENST00000365547 113 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 Y_RNA.456-201ENST00000384232 111 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 POLR2J4-204ENST00000418424 324 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.73□□□□□ -2.13
COL28A1Q2UY09 POLR2KP2-201ENST00000438155 177 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 HSPE1P21-201ENST00000438283 308 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 RPS4XP11-201ENST00000446897 772 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 RNY3P15-201ENST00000516297 97 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 AC015720.1-201ENST00000565251 277 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 MIR3198-2-201ENST00000577868 80 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 AL162424.1-201ENST00000602325 221 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 MIR8054-201ENST00000620877 86 ntBASIC1.73□□□□□ -2.13
COL28A1Q2UY09 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.73□□□□□ -2.13
COL28A1Q2UY09 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
COL28A1Q2UY09 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
COL28A1Q2UY09 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
COL28A1Q2UY09 SNORA4.2-201ENST00000365313 147 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 SNORD114-22-201ENST00000365423 72 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 RNU6-1248P-201ENST00000391096 64 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 RNU6-1109P-201ENST00000391187 107 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 RN7SKP200-201ENST00000410564 320 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 COX6CP10-201ENST00000416832 224 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 JTBP1-201ENST00000441314 247 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 MTND4LP30-201ENST00000454092 297 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 MTND5P22-201ENST00000458380 195 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 RNU1-123P-201ENST00000458950 160 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 AC091021.1-201ENST00000468051 388 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 SNORA31.10-201ENST00000516482 106 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.72□□□□□ -2.13
COL28A1Q2UY09 MIR4709-201ENST00000577272 72 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 DEFB117-201ENST00000602356 141 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 MIR502-201ENST00000606349 86 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 AC004832.4-201ENST00000608952 331 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 MIR8074-201ENST00000615081 81 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 AC007742.2-201ENST00000618226 398 ntBASIC1.72□□□□□ -2.13
COL28A1Q2UY09 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.72□□□□□ -2.13
COL28A1Q2UY09 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.71□□□□□ -2.13
COL28A1Q2UY09 snoU2_19.2-201ENST00000363024 80 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.310-201ENST00000365063 113 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 RNU6-290P-201ENST00000365212 101 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 RNU6-102P-201ENST00000384485 104 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 MIR30A-201ENST00000385092 71 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 RNU6-440P-201ENST00000390882 105 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 MIR548F4-201ENST00000408515 105 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 RPS20P10-201ENST00000451209 253 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.71□□□□□ -2.14
COL28A1Q2UY09 AP003733.2-201ENST00000529409 171 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 AP002004.2-201ENST00000531656 154 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 PVT1_3.1-201ENST00000620853 95 ntBASIC1.71□□□□□ -2.14
COL28A1Q2UY09 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.71□□□□□ -2.14
COL28A1Q2UY09 RNU6-414P-201ENST00000363705 104 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 SNORD116-13-201ENST00000384408 92 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 RNU6-1031P-201ENST00000384773 107 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
COL28A1Q2UY09 RNA5SP511-201ENST00000410487 115 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 Y_RNA.602-201ENST00000410535 92 ntBASIC1.7□□□□□ -2.14
COL28A1Q2UY09 AL161935.2-201ENST00000414627 60 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms