Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX4Q06945 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX4Q06945 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX4Q06945 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.1□□□□□ -1.91
SOX4Q06945 MIR340-201ENST00000362125 95 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 RNU6-851P-201ENST00000384565 107 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 RNA5SP293-201ENST00000410527 113 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 RPS15AP28-201ENST00000435088 386 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 AC105272.1-201ENST00000438604 198 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.09□□□□□ -1.91
SOX4Q06945 RNA5SP356-201ENST00000515972 94 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 RNU6-693P-201ENST00000516134 107 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 RNU6-1291P-201ENST00000516591 104 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 AC008507.4-201ENST00000585464 127 ntBASIC3.09□□□□□ -1.91
SOX4Q06945 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.09□□□□□ -1.92
SOX4Q06945 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
SOX4Q06945 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX4Q06945 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
SOX4Q06945 AC093908.1-201ENST00000623125 8092 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 Y_RNA.85-201ENST00000363014 111 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 RNU1-23P-201ENST00000363361 144 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 MIR570-201ENST00000384917 97 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 SNORD12C-201ENST00000386307 89 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 SNORD77.3-201ENST00000391113 65 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 FO393413.1-201ENST00000402892 195 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 RN7SKP284-201ENST00000411002 343 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 UQCRHP3-201ENST00000451503 251 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 CKS1BP2-201ENST00000497342 240 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 RNA5SP380-201ENST00000517190 98 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 AC007229.1-201ENST00000590455 412 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 AL137067.1-201ENST00000615933 120 ntBASIC3.08□□□□□ -1.92
SOX4Q06945 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SOX4Q06945 MAPK10-322ENST00000641485 4530 ntBASIC3.07□□□□□ -1.92
SOX4Q06945 Y_RNA.366-201ENST00000365540 102 ntBASIC3.07□□□□□ -1.92
SOX4Q06945 RNU11-5P-201ENST00000391216 129 ntBASIC3.07□□□□□ -1.92
SOX4Q06945 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.07□□□□□ -1.92
SOX4Q06945 AC108938.1-201ENST00000451204 136 ntBASIC3.07□□□□□ -1.92
SOX4Q06945 AC011406.1-201ENST00000512440 370 ntBASIC3.07□□□□□ -1.92
SOX4Q06945 SCARNA15-202ENST00000516881 127 ntBASIC3.07□□□□□ -1.92
SOX4Q06945 RNU7-128P-201ENST00000517247 62 ntBASIC3.07□□□□□ -1.92
SOX4Q06945 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.07□□□□□ -1.92
SOX4Q06945 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.07□□□□□ -1.92
SOX4Q06945 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.07□□□□□ -1.92
SOX4Q06945 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.07□□□□□ -1.92
SOX4Q06945 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.06□□□□□ -1.92
SOX4Q06945 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
SOX4Q06945 MIR148B-201ENST00000362252 99 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 snoU2-30.2-201ENST00000362805 70 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 RNA5SP139-201ENST00000364340 117 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 RNU6-805P-201ENST00000365643 106 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 Y_RNA.549-201ENST00000384657 102 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 MIR548A2-201ENST00000384956 97 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 MIR95-201ENST00000385072 81 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 CYP2C59P-201ENST00000457790 269 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 RN7SL75P-201ENST00000461926 281 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 COX6CP6-201ENST00000490840 228 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 AC018630.2-201ENST00000534866 2403 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
SOX4Q06945 AC107016.2-201ENST00000547968 190 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 FAM35CP-201ENST00000554755 2470 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 MIR4672-201ENST00000583126 81 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 ELOCP29-201ENST00000588193 334 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 AC009831.4-201ENST00000620744 325 ntBASIC3.06□□□□□ -1.92
SOX4Q06945 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.06□□□□□ -1.92
SOX4Q06945 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SOX4Q06945 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
SOX4Q06945 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SOX4Q06945 RNU6-766P-201ENST00000362478 107 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 RNU1-112P-201ENST00000364401 164 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 Y_RNA.267-201ENST00000364679 109 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 RNU6-756P-201ENST00000383997 107 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 RNU6-905P-201ENST00000384434 107 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 RNA5SP467-201ENST00000391274 118 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 RNU2-48P-201ENST00000410694 191 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 AC087499.2-201ENST00000432861 149 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 SNRPGP13-201ENST00000442212 177 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 UBE2DNL-203ENST00000474922 222 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 RN7SKP43-201ENST00000516173 320 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 RN7SKP282-201ENST00000516824 299 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 AC068657.1-201ENST00000520807 306 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 AC245166.1-201ENST00000521012 253 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 MIR4319-201ENST00000577285 85 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.05□□□□□ -1.92
SOX4Q06945 MIR6079-201ENST00000635807 62 ntBASIC3.05□□□□□ -1.92
SOX4Q06945 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
SOX4Q06945 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SOX4Q06945 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX4Q06945 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX4Q06945 MIR126-201ENST00000362291 85 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 Y_RNA.163-201ENST00000363702 113 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 Y_RNA.242-201ENST00000364473 110 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 Y_RNA.348-201ENST00000365403 103 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 MIR1302-4-201ENST00000408701 150 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 RNU6-341P-201ENST00000516973 96 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.04□□□□□ -1.92
SOX4Q06945 AC006023.1-201ENST00000603944 259 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 AC022217.4-201ENST00000604389 163 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 AL359075.3-201ENST00000613288 217 ntBASIC3.04□□□□□ -1.92
SOX4Q06945 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 1002.4 ms