Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL163195.1-201ENST00000496941 348 ntBASIC2.79□□□□□ -1.96
RNF4P78317 Y_RNA.692-201ENST00000516627 105 ntBASIC2.79□□□□□ -1.96
RNF4P78317 AC090049.2-201ENST00000550377 109 ntBASIC2.79□□□□□ -1.96
RNF4P78317 MIR3129-201ENST00000581095 76 ntBASIC2.79□□□□□ -1.96
RNF4P78317 AC008507.4-201ENST00000585464 127 ntBASIC2.79□□□□□ -1.96
RNF4P78317 U4atac.1-201ENST00000618345 95 ntBASIC2.79□□□□□ -1.96
RNF4P78317 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
RNF4P78317 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
RNF4P78317 AC009487.2-201ENST00000420969 6821 ntBASIC2.78□□□□□ -1.96
RNF4P78317 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.78□□□□□ -1.96
RNF4P78317 AL161431.1-201ENST00000618966 4205 ntBASIC2.78□□□□□ -1.96
RNF4P78317 Y_RNA.52-201ENST00000362760 96 ntBASIC2.78□□□□□ -1.96
RNF4P78317 RNU6-23P-201ENST00000363283 107 ntBASIC2.78□□□□□ -1.96
RNF4P78317 SNORA1-201ENST00000384107 130 ntBASIC2.78□□□□□ -1.96
RNF4P78317 RNA5SP274-201ENST00000410484 108 ntBASIC2.78□□□□□ -1.96
RNF4P78317 Z92545.1-201ENST00000411782 234 ntBASIC2.78□□□□□ -1.96
RNF4P78317 AL035461.1-201ENST00000421490 332 ntBASIC2.78□□□□□ -1.96
RNF4P78317 AC022018.1-201ENST00000430685 241 ntBASIC2.78□□□□□ -1.96
RNF4P78317 RPS26P45-201ENST00000471748 340 ntBASIC2.78□□□□□ -1.96
RNF4P78317 AL049873.1-201ENST00000480540 376 ntBASIC2.78□□□□□ -1.96
RNF4P78317 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.78□□□□□ -1.96
RNF4P78317 RNU6-772P-201ENST00000516042 105 ntBASIC2.78□□□□□ -1.96
RNF4P78317 RN7SKP179-201ENST00000516126 217 ntBASIC2.78□□□□□ -1.96
RNF4P78317 Y_RNA.690-201ENST00000516603 95 ntBASIC2.78□□□□□ -1.96
RNF4P78317 AC007318.2-201ENST00000620999 243 ntBASIC2.78□□□□□ -1.96
RNF4P78317 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
RNF4P78317 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
RNF4P78317 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.77□□□□□ -1.97
RNF4P78317 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.77□□□□□ -1.97
RNF4P78317 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
RNF4P78317 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
RNF4P78317 RNU6-1164P-201ENST00000364428 107 ntBASIC2.77□□□□□ -1.97
RNF4P78317 RPL21P3-201ENST00000395517 478 ntBASIC2.77□□□□□ -1.97
RNF4P78317 RNA5SP127-201ENST00000411051 133 ntBASIC2.77□□□□□ -1.97
RNF4P78317 CST2P1-201ENST00000425770 87 ntBASIC2.77□□□□□ -1.97
RNF4P78317 AC099677.2-201ENST00000436385 175 ntBASIC2.77□□□□□ -1.97
RNF4P78317 AC018634.1-201ENST00000437554 401 ntBASIC2.77□□□□□ -1.97
RNF4P78317 Y_RNA.666-201ENST00000516187 112 ntBASIC2.77□□□□□ -1.97
RNF4P78317 RNU6-504P-201ENST00000516568 104 ntBASIC2.77□□□□□ -1.97
RNF4P78317 RNU6-126P-201ENST00000516685 103 ntBASIC2.77□□□□□ -1.97
RNF4P78317 MIR3169-201ENST00000578032 83 ntBASIC2.77□□□□□ -1.97
RNF4P78317 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.77□□□□□ -1.97
RNF4P78317 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
RNF4P78317 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
RNF4P78317 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
RNF4P78317 SNORD68-201ENST00000363214 84 ntBASIC2.76□□□□□ -1.97
RNF4P78317 Y_RNA.114-201ENST00000363265 113 ntBASIC2.76□□□□□ -1.97
RNF4P78317 SNORD18B-201ENST00000365659 72 ntBASIC2.76□□□□□ -1.97
RNF4P78317 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.76□□□□□ -1.97
RNF4P78317 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.76□□□□□ -1.97
RNF4P78317 AL109933.2-201ENST00000452651 260 ntBASIC2.76□□□□□ -1.97
RNF4P78317 AL049830.1-201ENST00000468034 425 ntBASIC2.76□□□□□ -1.97
RNF4P78317 AP002004.2-201ENST00000531656 154 ntBASIC2.76□□□□□ -1.97
RNF4P78317 AL365205.2-201ENST00000594586 68 ntBASIC2.76□□□□□ -1.97
RNF4P78317 MAPK10-266ENST00000641066 6555 ntBASIC2.76□□□□□ -1.97
RNF4P78317 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
RNF4P78317 AL035425.3-201ENST00000564206 4996 ntBASIC2.75□□□□□ -1.97
RNF4P78317 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
RNF4P78317 RNU6-525P-201ENST00000363685 104 ntBASIC2.75□□□□□ -1.97
RNF4P78317 RNU6-309P-201ENST00000364573 106 ntBASIC2.75□□□□□ -1.97
RNF4P78317 RNU6-1056P-201ENST00000383996 107 ntBASIC2.75□□□□□ -1.97
RNF4P78317 SNORD61-201ENST00000384252 73 ntBASIC2.75□□□□□ -1.97
RNF4P78317 SNORA44-201ENST00000384584 132 ntBASIC2.75□□□□□ -1.97
RNF4P78317 SNORA46-201ENST00000384762 135 ntBASIC2.75□□□□□ -1.97
RNF4P78317 MIR515-2-201ENST00000384883 83 ntBASIC2.75□□□□□ -1.97
RNF4P78317 MIR515-1-201ENST00000384884 83 ntBASIC2.75□□□□□ -1.97
RNF4P78317 MIR624-201ENST00000385217 97 ntBASIC2.75□□□□□ -1.97
RNF4P78317 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.75□□□□□ -1.97
RNF4P78317 AL158147.1-201ENST00000443970 75 ntBASIC2.75□□□□□ -1.97
RNF4P78317 RNU7-26P-201ENST00000458980 63 ntBASIC2.75□□□□□ -1.97
RNF4P78317 RNU6-1061P-201ENST00000516530 99 ntBASIC2.75□□□□□ -1.97
RNF4P78317 RNU6-919P-201ENST00000516731 104 ntBASIC2.75□□□□□ -1.97
RNF4P78317 Y_RNA.712-201ENST00000517011 92 ntBASIC2.75□□□□□ -1.97
RNF4P78317 AC024995.1-201ENST00000523014 93 ntBASIC2.75□□□□□ -1.97
RNF4P78317 AL358944.1-201ENST00000528537 144 ntBASIC2.75□□□□□ -1.97
RNF4P78317 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
RNF4P78317 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.75□□□□□ -1.97
RNF4P78317 MTND5P32-201ENST00000560711 1802 ntBASIC2.75□□□□□ -1.97
RNF4P78317 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
RNF4P78317 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
RNF4P78317 RNU1-91P-201ENST00000364746 163 ntBASIC2.74□□□□□ -1.97
RNF4P78317 Y_RNA.280-201ENST00000364765 112 ntBASIC2.74□□□□□ -1.97
RNF4P78317 Y_RNA.563-201ENST00000384707 108 ntBASIC2.74□□□□□ -1.97
RNF4P78317 MIR522-201ENST00000385071 87 ntBASIC2.74□□□□□ -1.97
RNF4P78317 RNU2-52P-201ENST00000410680 190 ntBASIC2.74□□□□□ -1.97
RNF4P78317 AL606517.2-201ENST00000442855 241 ntBASIC2.74□□□□□ -1.97
RNF4P78317 RN7SL633P-201ENST00000488974 297 ntBASIC2.74□□□□□ -1.97
RNF4P78317 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.74□□□□□ -1.97
RNF4P78317 AC107016.2-201ENST00000547968 190 ntBASIC2.74□□□□□ -1.97
RNF4P78317 AC026271.5-201ENST00000577873 130 ntBASIC2.74□□□□□ -1.97
RNF4P78317 MIR3121-201ENST00000579680 77 ntBASIC2.74□□□□□ -1.97
RNF4P78317 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.74□□□□□ -1.97
RNF4P78317 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.74□□□□□ -1.97
RNF4P78317 AC022513.1-201ENST00000624512 117 ntBASIC2.74□□□□□ -1.97
RNF4P78317 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
RNF4P78317 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.74□□□□□ -1.97
RNF4P78317 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
RNF4P78317 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.73□□□□□ -1.97
RNF4P78317 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.73□□□□□ -1.97
RNF4P78317 RNU6-851P-201ENST00000384565 107 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms