Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU6-1019P-201ENST00000364424 107 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 SNORA16.1-201ENST00000364597 132 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.9□□□□□ -2.11
HDAC4P56524 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.9□□□□□ -2.11
HDAC4P56524 AC069257.2-201ENST00000441819 155 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 AL606517.2-201ENST00000442855 241 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 RPS26P45-201ENST00000471748 340 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 RNA5SP182-201ENST00000516064 82 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 RNU6-191P-201ENST00000516295 94 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 RPL21P9-201ENST00000556149 474 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 AC022254.1-201ENST00000567857 235 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 7SK.10-201ENST00000621414 298 ntBASIC1.9□□□□□ -2.11
HDAC4P56524 MIR378A-201ENST00000362177 66 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 RNU6-326P-201ENST00000365480 107 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 RNU6-196P-201ENST00000384315 107 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 RNU6-296P-201ENST00000384608 107 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 MIR1302-6-201ENST00000408466 90 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 RNU6-1186P-201ENST00000410429 97 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 RNA5SP100-201ENST00000410903 110 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 RNA5SP59-201ENST00000410922 110 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 AC010154.1-201ENST00000425857 269 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 AC108667.1-201ENST00000428618 249 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 HSPE1P13-201ENST00000451143 297 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 AC010409.1-201ENST00000487382 476 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 AL163195.1-201ENST00000496941 348 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.89□□□□□ -2.11
HDAC4P56524 SERF1AP1-201ENST00000514575 187 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 SNORA70.12-201ENST00000516084 153 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 RNU1-142P-201ENST00000516682 145 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 AC084364.2-201ENST00000546924 395 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.89□□□□□ -2.11
HDAC4P56524 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.89□□□□□ -2.11
HDAC4P56524 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 MIR6845-201ENST00000613182 61 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.89□□□□□ -2.11
HDAC4P56524 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
HDAC4P56524 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
HDAC4P56524 RNU6-112P-201ENST00000363599 104 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 Y_RNA.310-201ENST00000365063 113 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 SNORA25.9-201ENST00000365087 128 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 Y_RNA.452-201ENST00000384202 108 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 RNU2-38P-201ENST00000410856 79 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.88□□□□□ -2.11
HDAC4P56524 RPS27P1-201ENST00000450552 247 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 MTND1P19-201ENST00000511780 315 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 RNU7-99P-201ENST00000516271 62 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 RNU2-31P-201ENST00000516954 155 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 SCARNA24.2-201ENST00000516968 130 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 RNU7-172P-201ENST00000517125 64 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 AC004832.4-201ENST00000608952 331 ntBASIC1.88□□□□□ -2.11
HDAC4P56524 MIR335-201ENST00000362173 94 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 Y_RNA.122-201ENST00000363331 96 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 RNU6-801P-201ENST00000364087 105 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 MIR520A-201ENST00000384862 85 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 RNA5SP511-201ENST00000410487 115 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 RNU6-321P-201ENST00000410912 106 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 SNORD127-201ENST00000458892 86 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 AC091959.1-201ENST00000495857 238 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 RPL23AP63-201ENST00000498752 471 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.87□□□□□ -2.11
HDAC4P56524 AC015720.1-201ENST00000565251 277 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.87□□□□□ -2.11
HDAC4P56524 AC091178.2-201ENST00000584401 117 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 MIR3149-201ENST00000584629 83 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 AC012433.1-201ENST00000588916 398 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 AC073413.2-201ENST00000604332 360 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 AC022217.4-201ENST00000604389 163 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 U4.1-201ENST00000620349 87 ntBASIC1.87□□□□□ -2.11
HDAC4P56524 AC068700.1-201ENST00000565862 3754 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 AL391987.6-201ENST00000305671 199 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 Y_RNA.116-201ENST00000363292 103 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 SNORA63D-201ENST00000364359 132 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 Y_RNA.368-201ENST00000365547 113 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 Y_RNA.562-201ENST00000384695 113 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 SNORA40.18-201ENST00000391200 128 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 RNU11-5P-201ENST00000391216 129 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 RNU2-14P-201ENST00000411053 191 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.86□□□□□ -2.11
HDAC4P56524 RPS20P10-201ENST00000451209 253 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 Y_RNA.680-201ENST00000516441 93 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 SNORA44.1-201ENST00000517031 108 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 RNA5SP437-201ENST00000517249 129 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 MIR4419B-201ENST00000577260 68 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 AC010900.2-201ENST00000604508 210 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.86□□□□□ -2.11
HDAC4P56524 MIR8070-201ENST00000616510 88 ntBASIC1.86□□□□□ -2.11
HDAC4P56524 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
HDAC4P56524 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HDAC4P56524 RNU6-855P-201ENST00000410395 104 ntBASIC1.85□□□□□ -2.11
HDAC4P56524 CYCSP49-201ENST00000420810 319 ntBASIC1.85□□□□□ -2.11
HDAC4P56524 snoU13.18-201ENST00000459483 104 ntBASIC1.85□□□□□ -2.11
HDAC4P56524 RNU6-1278P-201ENST00000516130 107 ntBASIC1.85□□□□□ -2.11
HDAC4P56524 AC103810.8-201ENST00000607347 118 ntBASIC1.85□□□□□ -2.11
HDAC4P56524 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.85□□□□□ -2.11
HDAC4P56524 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
HDAC4P56524 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
HDAC4P56524 Y_RNA.14-201ENST00000362415 103 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 RNU6-1048P-201ENST00000364054 107 ntBASIC1.84□□□□□ -2.11
HDAC4P56524 Y_RNA.217-201ENST00000364214 105 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 183.6 ms