Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SNORD48-201ENST00000364953 64 ntBASIC1.82□□□□□ -2.12
CTCFP49711 RNU6-1175P-201ENST00000365200 107 ntBASIC1.82□□□□□ -2.12
CTCFP49711 RNU6-117P-201ENST00000365415 107 ntBASIC1.82□□□□□ -2.12
CTCFP49711 Y_RNA.439-201ENST00000384119 94 ntBASIC1.82□□□□□ -2.12
CTCFP49711 Y_RNA.462-201ENST00000384268 102 ntBASIC1.82□□□□□ -2.12
CTCFP49711 RNU6-360P-201ENST00000390944 104 ntBASIC1.82□□□□□ -2.12
CTCFP49711 AL031003.1-201ENST00000404229 172 ntBASIC1.82□□□□□ -2.12
CTCFP49711 RNA5SP436-201ENST00000516020 115 ntBASIC1.82□□□□□ -2.12
CTCFP49711 RNU6-155P-201ENST00000516347 100 ntBASIC1.82□□□□□ -2.12
CTCFP49711 AC022616.4-201ENST00000522985 181 ntBASIC1.82□□□□□ -2.12
CTCFP49711 MIR3618-201ENST00000580330 88 ntBASIC1.82□□□□□ -2.12
CTCFP49711 AL356055.1-201ENST00000602528 446 ntBASIC1.82□□□□□ -2.12
CTCFP49711 AC006380.1-201ENST00000603598 186 ntBASIC1.82□□□□□ -2.12
CTCFP49711 AC073413.2-201ENST00000604332 360 ntBASIC1.82□□□□□ -2.12
CTCFP49711 MIR8074-201ENST00000615081 81 ntBASIC1.82□□□□□ -2.12
CTCFP49711 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CTCFP49711 RNU6-1227P-201ENST00000383981 107 ntBASIC1.81□□□□□ -2.12
CTCFP49711 Y_RNA.551-201ENST00000384661 102 ntBASIC1.81□□□□□ -2.12
CTCFP49711 Y_RNA.713-201ENST00000517013 96 ntBASIC1.81□□□□□ -2.12
CTCFP49711 Y_RNA.715-201ENST00000517082 110 ntBASIC1.81□□□□□ -2.12
CTCFP49711 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.81□□□□□ -2.12
CTCFP49711 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.81□□□□□ -2.12
CTCFP49711 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CTCFP49711 Y_RNA.158-201ENST00000363651 101 ntBASIC1.8□□□□□ -2.12
CTCFP49711 SNORA63.7-201ENST00000365579 123 ntBASIC1.8□□□□□ -2.12
CTCFP49711 SNORD63-201ENST00000384262 68 ntBASIC1.8□□□□□ -2.12
CTCFP49711 MIR216A-201ENST00000385063 110 ntBASIC1.8□□□□□ -2.12
CTCFP49711 RNU5A-5P-201ENST00000411054 116 ntBASIC1.8□□□□□ -2.12
CTCFP49711 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.8□□□□□ -2.12
CTCFP49711 snoU13.27-201ENST00000459278 104 ntBASIC1.8□□□□□ -2.12
CTCFP49711 RNU6-436P-201ENST00000516171 114 ntBASIC1.8□□□□□ -2.12
CTCFP49711 SNORA31.10-201ENST00000516482 106 ntBASIC1.8□□□□□ -2.12
CTCFP49711 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.8□□□□□ -2.12
CTCFP49711 RAC1P9-201ENST00000604990 392 ntBASIC1.8□□□□□ -2.12
CTCFP49711 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.8□□□□□ -2.12
CTCFP49711 AC018630.2-201ENST00000534866 2403 ntBASIC1.79□□□□□ -2.12
CTCFP49711 Y_RNA.143-201ENST00000363520 106 ntBASIC1.79□□□□□ -2.12
CTCFP49711 RNA5SP457-201ENST00000363657 124 ntBASIC1.79□□□□□ -2.12
CTCFP49711 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.79□□□□□ -2.12
CTCFP49711 RNU6-937P-201ENST00000384325 106 ntBASIC1.79□□□□□ -2.12
CTCFP49711 RNU6-505P-201ENST00000384427 107 ntBASIC1.79□□□□□ -2.12
CTCFP49711 RNU2-61P-201ENST00000411069 191 ntBASIC1.79□□□□□ -2.12
CTCFP49711 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.79□□□□□ -2.12
CTCFP49711 AC005042.3-201ENST00000453230 174 ntBASIC1.79□□□□□ -2.12
CTCFP49711 Y_RNA.721-201ENST00000517207 102 ntBASIC1.79□□□□□ -2.12
CTCFP49711 AC136932.1-201ENST00000574771 208 ntBASIC1.79□□□□□ -2.12
CTCFP49711 MIR4680-201ENST00000580906 66 ntBASIC1.79□□□□□ -2.12
CTCFP49711 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.79□□□□□ -2.12
CTCFP49711 AC040896.1-201ENST00000613819 479 ntBASIC1.79□□□□□ -2.12
CTCFP49711 AC008133.2-201ENST00000624540 351 ntBASIC1.79□□□□□ -2.12
CTCFP49711 RNU4-13P-201ENST00000364019 141 ntBASIC1.78□□□□□ -2.12
CTCFP49711 Y_RNA.202-201ENST00000364083 110 ntBASIC1.78□□□□□ -2.12
CTCFP49711 AC117470.1-201ENST00000381974 330 ntBASIC1.78□□□□□ -2.12
CTCFP49711 RNU6-338P-201ENST00000383888 105 ntBASIC1.78□□□□□ -2.12
CTCFP49711 Y_RNA.389-201ENST00000383924 113 ntBASIC1.78□□□□□ -2.12
CTCFP49711 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
CTCFP49711 MIR1252-201ENST00000408861 65 ntBASIC1.78□□□□□ -2.12
CTCFP49711 RNU6-101P-201ENST00000410323 104 ntBASIC1.78□□□□□ -2.12
CTCFP49711 AL390729.2-201ENST00000416137 156 ntBASIC1.78□□□□□ -2.12
CTCFP49711 AC245047.3-201ENST00000429428 127 ntBASIC1.78□□□□□ -2.12
CTCFP49711 SNORA70.12-201ENST00000516084 153 ntBASIC1.78□□□□□ -2.12
CTCFP49711 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.78□□□□□ -2.12
CTCFP49711 AC091178.2-201ENST00000584401 117 ntBASIC1.78□□□□□ -2.12
CTCFP49711 AC016925.2-201ENST00000605108 242 ntBASIC1.78□□□□□ -2.12
CTCFP49711 MIR8054-201ENST00000620877 86 ntBASIC1.78□□□□□ -2.12
CTCFP49711 AC127459.3-201ENST00000624328 466 ntBASIC1.78□□□□□ -2.12
CTCFP49711 MIR6079-201ENST00000635807 62 ntBASIC1.78□□□□□ -2.12
CTCFP49711 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CTCFP49711 SNORD81.1-201ENST00000363064 77 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RNU6-414P-201ENST00000363705 104 ntBASIC1.77□□□□□ -2.13
CTCFP49711 SNORA33.2-201ENST00000365413 134 ntBASIC1.77□□□□□ -2.13
CTCFP49711 SNORA12.1-201ENST00000390873 148 ntBASIC1.77□□□□□ -2.13
CTCFP49711 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RN7SKP101-201ENST00000411376 320 ntBASIC1.77□□□□□ -2.13
CTCFP49711 JTBP1-201ENST00000441314 247 ntBASIC1.77□□□□□ -2.13
CTCFP49711 HSPE1P13-201ENST00000451143 297 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RNU7-94P-201ENST00000459576 63 ntBASIC1.77□□□□□ -2.13
CTCFP49711 AC010655.3-201ENST00000478818 450 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RNU6-1278P-201ENST00000516130 107 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RNU6-397P-201ENST00000516226 104 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RNU6-1046P-201ENST00000516538 107 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RNA5SP395-201ENST00000516567 118 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RNU6-63P-201ENST00000516690 95 ntBASIC1.77□□□□□ -2.13
CTCFP49711 RNU6-1137P-201ENST00000517073 99 ntBASIC1.77□□□□□ -2.13
CTCFP49711 SNORA77B-201ENST00000578179 125 ntBASIC1.77□□□□□ -2.13
CTCFP49711 MIR4422-201ENST00000581938 83 ntBASIC1.77□□□□□ -2.13
CTCFP49711 AL929325.1-201ENST00000603096 117 ntBASIC1.77□□□□□ -2.13
CTCFP49711 AC011373.1-201ENST00000607270 237 ntBASIC1.77□□□□□ -2.13
CTCFP49711 AC022140.2-201ENST00000623500 188 ntBASIC1.77□□□□□ -2.13
CTCFP49711 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.77□□□□□ -2.13
CTCFP49711 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
CTCFP49711 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.76□□□□□ -2.13
CTCFP49711 MIR424-201ENST00000362227 98 ntBASIC1.76□□□□□ -2.13
CTCFP49711 SNORD114-27-201ENST00000363766 70 ntBASIC1.76□□□□□ -2.13
CTCFP49711 RNU6-324P-201ENST00000363957 106 ntBASIC1.76□□□□□ -2.13
CTCFP49711 Y_RNA.331-201ENST00000365267 102 ntBASIC1.76□□□□□ -2.13
CTCFP49711 RNU6-203P-201ENST00000384038 104 ntBASIC1.76□□□□□ -2.13
CTCFP49711 Y_RNA.455-201ENST00000384230 98 ntBASIC1.76□□□□□ -2.13
CTCFP49711 Y_RNA.527-201ENST00000384573 102 ntBASIC1.76□□□□□ -2.13
CTCFP49711 RNU6-376P-201ENST00000384731 106 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms