Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RNU6-47P-201ENST00000383866 107 ntBASIC1.97□□□□□ -2.09
SOX2P48431 RNU6-918P-201ENST00000391219 106 ntBASIC1.97□□□□□ -2.09
SOX2P48431 Y_RNA.621-201ENST00000411065 96 ntBASIC1.97□□□□□ -2.09
SOX2P48431 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.97□□□□□ -2.09
SOX2P48431 AC233266.1-201ENST00000454518 96 ntBASIC1.97□□□□□ -2.09
SOX2P48431 TRBV12-1-201ENST00000479785 344 ntBASIC1.97□□□□□ -2.09
SOX2P48431 RNA5SP356-201ENST00000515972 94 ntBASIC1.97□□□□□ -2.09
SOX2P48431 RNU6-341P-201ENST00000516973 96 ntBASIC1.97□□□□□ -2.09
SOX2P48431 MIR4308-201ENST00000580634 81 ntBASIC1.97□□□□□ -2.09
SOX2P48431 AC006023.1-201ENST00000603944 259 ntBASIC1.97□□□□□ -2.09
SOX2P48431 AC072026.1-201ENST00000605023 201 ntBASIC1.97□□□□□ -2.09
SOX2P48431 AC242852.1-201ENST00000612151 96 ntBASIC1.97□□□□□ -2.09
SOX2P48431 AC244015.1-201ENST00000622301 99 ntBASIC1.97□□□□□ -2.09
SOX2P48431 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.97□□□□□ -2.09
SOX2P48431 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
SOX2P48431 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SOX2P48431 AC131280.1-202ENST00000624067 4211 ntBASIC1.96□□□□□ -2.09
SOX2P48431 AC062016.1-201ENST00000355719 319 ntBASIC1.96□□□□□ -2.1
SOX2P48431 RNU6-674P-201ENST00000363831 107 ntBASIC1.96□□□□□ -2.1
SOX2P48431 SNORA16B-201ENST00000364674 135 ntBASIC1.96□□□□□ -2.1
SOX2P48431 Y_RNA.267-201ENST00000364679 109 ntBASIC1.96□□□□□ -2.1
SOX2P48431 RNU6-969P-201ENST00000383900 105 ntBASIC1.96□□□□□ -2.1
SOX2P48431 SNORA48.1-201ENST00000390879 135 ntBASIC1.96□□□□□ -2.1
SOX2P48431 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.96□□□□□ -2.1
SOX2P48431 RNU6-383P-201ENST00000410864 94 ntBASIC1.96□□□□□ -2.1
SOX2P48431 AC069257.2-201ENST00000441819 155 ntBASIC1.96□□□□□ -2.1
SOX2P48431 AC108938.1-201ENST00000451204 136 ntBASIC1.96□□□□□ -2.1
SOX2P48431 RNU7-120P-201ENST00000459334 63 ntBASIC1.96□□□□□ -2.1
SOX2P48431 RN7SKP164-201ENST00000516138 266 ntBASIC1.96□□□□□ -2.1
SOX2P48431 RNA5SP24-201ENST00000516478 95 ntBASIC1.96□□□□□ -2.1
SOX2P48431 RNU6-1291P-201ENST00000516591 104 ntBASIC1.96□□□□□ -2.1
SOX2P48431 SNORD53-201ENST00000579969 78 ntBASIC1.96□□□□□ -2.1
SOX2P48431 AL929325.1-201ENST00000603096 117 ntBASIC1.96□□□□□ -2.1
SOX2P48431 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SOX2P48431 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.95□□□□□ -2.1
SOX2P48431 Y_RNA.7-201ENST00000362352 102 ntBASIC1.95□□□□□ -2.1
SOX2P48431 Y_RNA.435-201ENST00000384095 112 ntBASIC1.95□□□□□ -2.1
SOX2P48431 RNU6-381P-201ENST00000391259 108 ntBASIC1.95□□□□□ -2.1
SOX2P48431 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.95□□□□□ -2.1
SOX2P48431 RPS27P21-201ENST00000486977 252 ntBASIC1.95□□□□□ -2.1
SOX2P48431 AC107393.1-201ENST00000512403 346 ntBASIC1.95□□□□□ -2.1
SOX2P48431 RNVU1-2-201ENST00000516326 135 ntBASIC1.95□□□□□ -2.1
SOX2P48431 AL358944.1-201ENST00000528537 144 ntBASIC1.95□□□□□ -2.1
SOX2P48431 AC084364.2-201ENST00000546924 395 ntBASIC1.95□□□□□ -2.1
SOX2P48431 MIR2681-201ENST00000581814 105 ntBASIC1.95□□□□□ -2.1
SOX2P48431 U1.36-201ENST00000620684 176 ntBASIC1.95□□□□□ -2.1
SOX2P48431 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
SOX2P48431 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SOX2P48431 Y_RNA.121-201ENST00000363309 113 ntBASIC1.94□□□□□ -2.1
SOX2P48431 SNORA5B-201ENST00000363786 132 ntBASIC1.94□□□□□ -2.1
SOX2P48431 Y_RNA.203-201ENST00000364106 102 ntBASIC1.94□□□□□ -2.1
SOX2P48431 Y_RNA.233-201ENST00000364407 101 ntBASIC1.94□□□□□ -2.1
SOX2P48431 RNU4-41P-201ENST00000364426 143 ntBASIC1.94□□□□□ -2.1
SOX2P48431 Y_RNA.238-201ENST00000364441 102 ntBASIC1.94□□□□□ -2.1
SOX2P48431 Y_RNA.270-201ENST00000364693 104 ntBASIC1.94□□□□□ -2.1
SOX2P48431 RNU4-70P-201ENST00000384579 139 ntBASIC1.94□□□□□ -2.1
SOX2P48431 Y_RNA.571-201ENST00000384753 98 ntBASIC1.94□□□□□ -2.1
SOX2P48431 AL512604.1-201ENST00000404812 257 ntBASIC1.94□□□□□ -2.1
SOX2P48431 RNA5SP501-201ENST00000410990 112 ntBASIC1.94□□□□□ -2.1
SOX2P48431 RNA5SP184-201ENST00000411071 108 ntBASIC1.94□□□□□ -2.1
SOX2P48431 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.94□□□□□ -2.1
SOX2P48431 MTND2P29-201ENST00000438595 412 ntBASIC1.94□□□□□ -2.1
SOX2P48431 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.94□□□□□ -2.1
SOX2P48431 AP002004.2-201ENST00000531656 154 ntBASIC1.94□□□□□ -2.1
SOX2P48431 MIR5007-201ENST00000583098 95 ntBASIC1.94□□□□□ -2.1
SOX2P48431 AC078899.2-201ENST00000595282 212 ntBASIC1.94□□□□□ -2.1
SOX2P48431 FTX_2.1-201ENST00000618816 94 ntBASIC1.94□□□□□ -2.1
SOX2P48431 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
SOX2P48431 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SOX2P48431 RNU6-103P-201ENST00000363686 107 ntBASIC1.93□□□□□ -2.1
SOX2P48431 RNU6-1080P-201ENST00000383982 107 ntBASIC1.93□□□□□ -2.1
SOX2P48431 SNORA67.4-201ENST00000384688 142 ntBASIC1.93□□□□□ -2.1
SOX2P48431 Y_RNA.572-201ENST00000384757 98 ntBASIC1.93□□□□□ -2.1
SOX2P48431 RNU2-2P-201ENST00000410396 191 ntBASIC1.93□□□□□ -2.1
SOX2P48431 RNA5SP450-201ENST00000411206 102 ntBASIC1.93□□□□□ -2.1
SOX2P48431 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
SOX2P48431 AC245047.3-201ENST00000429428 127 ntBASIC1.93□□□□□ -2.1
SOX2P48431 AC245047.4-201ENST00000433189 144 ntBASIC1.93□□□□□ -2.1
SOX2P48431 UBE2DNL-203ENST00000474922 222 ntBASIC1.93□□□□□ -2.1
SOX2P48431 AC022559.1-201ENST00000520905 205 ntBASIC1.93□□□□□ -2.1
SOX2P48431 AC022217.4-201ENST00000604389 163 ntBASIC1.93□□□□□ -2.1
SOX2P48431 RNU2-4P-201ENST00000606190 192 ntBASIC1.93□□□□□ -2.1
SOX2P48431 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SOX2P48431 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SOX2P48431 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SOX2P48431 snoU2_19.4-201ENST00000364329 80 ntBASIC1.92□□□□□ -2.1
SOX2P48431 Y_RNA.229-201ENST00000364347 113 ntBASIC1.92□□□□□ -2.1
SOX2P48431 MIR17-201ENST00000385012 84 ntBASIC1.92□□□□□ -2.1
SOX2P48431 MIR221-201ENST00000385135 110 ntBASIC1.92□□□□□ -2.1
SOX2P48431 MIR616-201ENST00000385293 97 ntBASIC1.92□□□□□ -2.1
SOX2P48431 RNA5SP496-201ENST00000391240 109 ntBASIC1.92□□□□□ -2.1
SOX2P48431 AL356379.1-201ENST00000414105 126 ntBASIC1.92□□□□□ -2.1
SOX2P48431 AC009310.1-201ENST00000414414 451 ntBASIC1.92□□□□□ -2.1
SOX2P48431 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.92□□□□□ -2.1
SOX2P48431 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.92□□□□□ -2.1
SOX2P48431 RNU6-861P-201ENST00000516745 106 ntBASIC1.92□□□□□ -2.1
SOX2P48431 RNU2-56P-201ENST00000516826 190 ntBASIC1.92□□□□□ -2.1
SOX2P48431 RNU2-19P-201ENST00000517288 84 ntBASIC1.92□□□□□ -2.1
SOX2P48431 AL391903.3-201ENST00000612158 163 ntBASIC1.92□□□□□ -2.1
SOX2P48431 MIR6852-201ENST00000621699 66 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms