Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MIR4299-201ENST00000577899 72 ntBASIC1.87□□□□□ -2.11
PTPN9P43378 AL512605.2-201ENST00000592972 256 ntBASIC1.87□□□□□ -2.11
PTPN9P43378 AC005972.2-201ENST00000604690 348 ntBASIC1.87□□□□□ -2.11
PTPN9P43378 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
PTPN9P43378 RNU6-702P-201ENST00000364982 107 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 SNORD116-13-201ENST00000384408 92 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 Y_RNA.562-201ENST00000384695 113 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 RPL31P63-201ENST00000422565 375 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 U8.19-201ENST00000459095 133 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 RPL23AP42-201ENST00000471152 471 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.86□□□□□ -2.11
PTPN9P43378 MIR4503-201ENST00000582187 83 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 MIR3149-201ENST00000584629 83 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 AC022217.4-201ENST00000604389 163 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 U2.14-201ENST00000615943 113 ntBASIC1.86□□□□□ -2.11
PTPN9P43378 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.86□□□□□ -2.11
PTPN9P43378 SNORA72.4-201ENST00000384174 132 ntBASIC1.85□□□□□ -2.11
PTPN9P43378 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.85□□□□□ -2.11
PTPN9P43378 RNA5SP511-201ENST00000410487 115 ntBASIC1.85□□□□□ -2.11
PTPN9P43378 AL135790.2-201ENST00000437701 267 ntBASIC1.85□□□□□ -2.11
PTPN9P43378 SNORD127-201ENST00000458892 86 ntBASIC1.85□□□□□ -2.11
PTPN9P43378 MIR3122-201ENST00000577243 73 ntBASIC1.85□□□□□ -2.11
PTPN9P43378 MIR4713-201ENST00000582691 75 ntBASIC1.85□□□□□ -2.11
PTPN9P43378 AP003357.1-201ENST00000604497 148 ntBASIC1.85□□□□□ -2.11
PTPN9P43378 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.85□□□□□ -2.11
PTPN9P43378 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
PTPN9P43378 Y_RNA.44-201ENST00000362676 108 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 Y_RNA.172-201ENST00000363765 102 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 RNU4-13P-201ENST00000364019 141 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 Y_RNA.217-201ENST00000364214 105 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 Y_RNA.275-201ENST00000364726 110 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 Y_RNA.352-201ENST00000365439 102 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 MIR676-201ENST00000390702 67 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 RNU6-360P-201ENST00000390944 104 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 AC245047.3-201ENST00000429428 127 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.84□□□□□ -2.11
PTPN9P43378 Y_RNA.641-201ENST00000459414 105 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 RNA5SP57-201ENST00000459463 123 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 AC091021.1-201ENST00000468051 388 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 RNU6-63P-201ENST00000516690 95 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 SNORA31.17-201ENST00000516953 127 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 RNA5SP437-201ENST00000517249 129 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 AP002004.2-201ENST00000531656 154 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.84□□□□□ -2.11
PTPN9P43378 MIR6845-201ENST00000613182 61 ntBASIC1.84□□□□□ -2.11
PTPN9P43378 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.84□□□□□ -2.11
PTPN9P43378 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.84□□□□□ -2.11
PTPN9P43378 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
PTPN9P43378 AC100821.1-201ENST00000523153 2479 ntBASIC1.84□□□□□ -2.12
PTPN9P43378 RNU6-801P-201ENST00000364087 105 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 SNORD48-201ENST00000364953 64 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 SNORA72-201ENST00000384339 132 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 MIR504-201ENST00000385065 83 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 SNORA40.18-201ENST00000391200 128 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 MIR548H3-201ENST00000408771 118 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 RNU2-7P-201ENST00000410794 178 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.83□□□□□ -2.12
PTPN9P43378 FTH1P12-201ENST00000432137 551 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 HSPE1P21-201ENST00000438283 308 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 RPS4XP11-201ENST00000446897 772 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 RPL23AP63-201ENST00000498752 471 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 RNU6-1096P-201ENST00000517089 102 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
PTPN9P43378 MIR3618-201ENST00000580330 88 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 AL162424.1-201ENST00000602325 221 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 AC062037.2-201ENST00000610137 73 ntBASIC1.83□□□□□ -2.12
PTPN9P43378 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
PTPN9P43378 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
PTPN9P43378 RNU6-661P-201ENST00000362409 107 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 Y_RNA.14-201ENST00000362415 103 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 RNU6-1272P-201ENST00000362776 107 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
PTPN9P43378 RNA5SP109-201ENST00000391010 116 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.82□□□□□ -2.12
PTPN9P43378 HSPE1P9-201ENST00000440046 311 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 AC104332.1-201ENST00000440471 797 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 AL606517.2-201ENST00000442855 241 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 RNU6-1132P-201ENST00000459214 107 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 RPL39P38-201ENST00000467018 153 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.82□□□□□ -2.12
PTPN9P43378 RNU7-115P-201ENST00000516433 55 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 RNU7-28P-201ENST00000516759 62 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 RNU6-295P-201ENST00000516901 104 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 SCARNA24.2-201ENST00000516968 130 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 MIR4255-201ENST00000579351 72 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 MIR8054-201ENST00000620877 86 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 AC084768.2-201ENST00000622736 221 ntBASIC1.82□□□□□ -2.12
PTPN9P43378 RNU6-899P-201ENST00000363947 107 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 MIR1289-2-201ENST00000408360 111 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 RN7SKP200-201ENST00000410564 320 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.81□□□□□ -2.12
PTPN9P43378 snoU13.27-201ENST00000459278 104 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 AC127455.1-201ENST00000565496 145 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 AC024614.2-201ENST00000577584 372 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 AC012433.1-201ENST00000588916 398 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 SNORA28-201ENST00000606769 126 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 MIR548AY-201ENST00000617669 107 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 AC068647.2-201ENST00000637380 353 ntBASIC1.81□□□□□ -2.12
PTPN9P43378 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms