Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU6-855P-201ENST00000410395 104 ntBASIC1.6□□□□□ -2.15
MSH2P43246 Y_RNA.602-201ENST00000410535 92 ntBASIC1.6□□□□□ -2.15
MSH2P43246 AC024067.1-201ENST00000426199 223 ntBASIC1.6□□□□□ -2.15
MSH2P43246 POLR2KP2-201ENST00000438155 177 ntBASIC1.6□□□□□ -2.15
MSH2P43246 AC245517.4-201ENST00000448601 281 ntBASIC1.6□□□□□ -2.15
MSH2P43246 HSPE1P25-201ENST00000455484 251 ntBASIC1.6□□□□□ -2.15
MSH2P43246 snoU13.23-201ENST00000458863 104 ntBASIC1.6□□□□□ -2.15
MSH2P43246 AC023790.1-201ENST00000482174 347 ntBASIC1.6□□□□□ -2.15
MSH2P43246 RNU6-496P-201ENST00000516145 99 ntBASIC1.6□□□□□ -2.15
MSH2P43246 RNU6-902P-201ENST00000517212 91 ntBASIC1.6□□□□□ -2.15
MSH2P43246 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH2P43246 AP002004.2-201ENST00000531656 154 ntBASIC1.6□□□□□ -2.15
MSH2P43246 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.6□□□□□ -2.15
MSH2P43246 MIR3145-201ENST00000580727 82 ntBASIC1.6□□□□□ -2.15
MSH2P43246 Y_RNA.812-201ENST00000610788 101 ntBASIC1.6□□□□□ -2.15
MSH2P43246 Y_RNA.784-201ENST00000613803 101 ntBASIC1.6□□□□□ -2.15
MSH2P43246 Y_RNA.787-201ENST00000616522 101 ntBASIC1.6□□□□□ -2.15
MSH2P43246 Y_RNA.780-201ENST00000617336 101 ntBASIC1.6□□□□□ -2.15
MSH2P43246 Y_RNA.801-201ENST00000619005 101 ntBASIC1.6□□□□□ -2.15
MSH2P43246 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
MSH2P43246 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.59□□□□□ -2.15
MSH2P43246 Y_RNA.19-201ENST00000362462 99 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AL627390.1-201ENST00000396055 340 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AL034345.1-201ENST00000407768 123 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AC113618.1-201ENST00000416747 285 ntBASIC1.59□□□□□ -2.15
MSH2P43246 CYCSP49-201ENST00000420810 319 ntBASIC1.59□□□□□ -2.15
MSH2P43246 STAG3L5P-204ENST00000443759 179 ntBASIC1.59□□□□□ -2.15
MSH2P43246 RPS4XP11-201ENST00000446897 772 ntBASIC1.59□□□□□ -2.15
MSH2P43246 RPS20P10-201ENST00000451209 253 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AC233266.1-201ENST00000454518 96 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.59□□□□□ -2.15
MSH2P43246 LINC01399-202ENST00000458450 244 ntBASIC1.59□□□□□ -2.15
MSH2P43246 HMGN1P10-201ENST00000474557 553 ntBASIC1.59□□□□□ -2.15
MSH2P43246 RNY3P15-201ENST00000516297 97 ntBASIC1.59□□□□□ -2.15
MSH2P43246 RNU2-56P-201ENST00000516826 190 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.59□□□□□ -2.15
MSH2P43246 AL358944.1-201ENST00000528537 144 ntBASIC1.59□□□□□ -2.15
MSH2P43246 MIR3937-201ENST00000580135 106 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AL162424.1-201ENST00000602325 221 ntBASIC1.59□□□□□ -2.15
MSH2P43246 SNORA28-201ENST00000606769 126 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AC242852.1-201ENST00000612151 96 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AC244015.1-201ENST00000622301 99 ntBASIC1.59□□□□□ -2.15
MSH2P43246 AP000648.3-201ENST00000623539 4507 ntBASIC1.59□□□□□ -2.16
MSH2P43246 SNORD33-201ENST00000362761 85 ntBASIC1.58□□□□□ -2.16
MSH2P43246 RNU4-13P-201ENST00000364019 141 ntBASIC1.58□□□□□ -2.16
MSH2P43246 RNU6-806P-201ENST00000365147 105 ntBASIC1.58□□□□□ -2.16
MSH2P43246 MIR320A-201ENST00000385302 82 ntBASIC1.58□□□□□ -2.16
MSH2P43246 Y_RNA.581-201ENST00000391017 97 ntBASIC1.58□□□□□ -2.16
MSH2P43246 AC004965.1-201ENST00000413033 213 ntBASIC1.58□□□□□ -2.16
MSH2P43246 MRPS35P2-201ENST00000508242 191 ntBASIC1.58□□□□□ -2.16
MSH2P43246 RNU6-1143P-201ENST00000516125 104 ntBASIC1.58□□□□□ -2.16
MSH2P43246 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.58□□□□□ -2.16
MSH2P43246 AC006504.6-201ENST00000590142 199 ntBASIC1.58□□□□□ -2.16
MSH2P43246 AC005972.2-201ENST00000604690 348 ntBASIC1.58□□□□□ -2.16
MSH2P43246 AL121890.5-201ENST00000620848 304 ntBASIC1.58□□□□□ -2.16
MSH2P43246 Y_RNA.26-201ENST00000362539 101 ntBASIC1.57□□□□□ -2.16
MSH2P43246 RNU4-90P-201ENST00000362773 141 ntBASIC1.57□□□□□ -2.16
MSH2P43246 Y_RNA.265-201ENST00000364677 108 ntBASIC1.57□□□□□ -2.16
MSH2P43246 Y_RNA.310-201ENST00000365063 113 ntBASIC1.57□□□□□ -2.16
MSH2P43246 Y_RNA.341-201ENST00000365341 102 ntBASIC1.57□□□□□ -2.16
MSH2P43246 Y_RNA.368-201ENST00000365547 113 ntBASIC1.57□□□□□ -2.16
MSH2P43246 Y_RNA.456-201ENST00000384232 111 ntBASIC1.57□□□□□ -2.16
MSH2P43246 RNU6-1160P-201ENST00000384546 104 ntBASIC1.57□□□□□ -2.16
MSH2P43246 MIR764-201ENST00000390811 85 ntBASIC1.57□□□□□ -2.16
MSH2P43246 AL590004.1-201ENST00000405321 300 ntBASIC1.57□□□□□ -2.16
MSH2P43246 AL135790.2-201ENST00000437701 267 ntBASIC1.57□□□□□ -2.16
MSH2P43246 AC027119.1-201ENST00000440877 241 ntBASIC1.57□□□□□ -2.16
MSH2P43246 AC098869.1-201ENST00000481627 292 ntBASIC1.57□□□□□ -2.16
MSH2P43246 RNU7-28P-201ENST00000516759 62 ntBASIC1.57□□□□□ -2.16
MSH2P43246 AC015712.3-201ENST00000559380 164 ntBASIC1.57□□□□□ -2.16
MSH2P43246 AC015688.6-201ENST00000577737 104 ntBASIC1.57□□□□□ -2.16
MSH2P43246 MIR4524B-201ENST00000581569 115 ntBASIC1.57□□□□□ -2.16
MSH2P43246 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.57□□□□□ -2.16
MSH2P43246 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
MSH2P43246 RNU6-1123P-201ENST00000362347 106 ntBASIC1.56□□□□□ -2.16
MSH2P43246 snoU2_19.2-201ENST00000363024 80 ntBASIC1.56□□□□□ -2.16
MSH2P43246 RNU4-80P-201ENST00000363200 141 ntBASIC1.56□□□□□ -2.16
MSH2P43246 AL049830.1-201ENST00000468034 425 ntBASIC1.56□□□□□ -2.16
MSH2P43246 AC073349.3-201ENST00000617616 186 ntBASIC1.56□□□□□ -2.16
MSH2P43246 Y_RNA.64-201ENST00000362845 102 ntBASIC1.55□□□□□ -2.16
MSH2P43246 Y_RNA.136-201ENST00000363444 102 ntBASIC1.55□□□□□ -2.16
MSH2P43246 RNA5SP190-201ENST00000365222 118 ntBASIC1.55□□□□□ -2.16
MSH2P43246 Y_RNA.418-201ENST00000384029 102 ntBASIC1.55□□□□□ -2.16
MSH2P43246 Y_RNA.569-201ENST00000384749 103 ntBASIC1.55□□□□□ -2.16
MSH2P43246 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
MSH2P43246 RNA5SP482-201ENST00000391269 118 ntBASIC1.55□□□□□ -2.16
MSH2P43246 MIR1304-201ENST00000408243 91 ntBASIC1.55□□□□□ -2.16
MSH2P43246 RPL21P38-201ENST00000418090 167 ntBASIC1.55□□□□□ -2.16
MSH2P43246 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.55□□□□□ -2.16
MSH2P43246 RPS27P16-201ENST00000425758 201 ntBASIC1.55□□□□□ -2.16
MSH2P43246 AL731563.1-201ENST00000442202 214 ntBASIC1.55□□□□□ -2.16
MSH2P43246 OR9P1P-201ENST00000496431 281 ntBASIC1.55□□□□□ -2.16
MSH2P43246 AP003733.2-201ENST00000529409 171 ntBASIC1.55□□□□□ -2.16
MSH2P43246 AC011604.1-201ENST00000545978 196 ntBASIC1.55□□□□□ -2.16
MSH2P43246 MIR4255-201ENST00000579351 72 ntBASIC1.55□□□□□ -2.16
MSH2P43246 MIR3683-201ENST00000580847 82 ntBASIC1.55□□□□□ -2.16
MSH2P43246 AL513423.1-201ENST00000621695 132 ntBASIC1.55□□□□□ -2.16
MSH2P43246 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
MSH2P43246 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.55□□□□□ -2.16
MSH2P43246 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms