Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 PRELID2P1-201ENST00000552837 301 ntBASIC3.2□□□□□ -1.9
LIG1P18858 MIR3199-1-201ENST00000582434 88 ntBASIC3.2□□□□□ -1.9
LIG1P18858 U2.20-201ENST00000613956 192 ntBASIC3.2□□□□□ -1.9
LIG1P18858 U6.73-201ENST00000619194 103 ntBASIC3.2□□□□□ -1.9
LIG1P18858 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
LIG1P18858 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIG1P18858 SNORA63.4-201ENST00000362763 126 ntBASIC3.19□□□□□ -1.9
LIG1P18858 Y_RNA.114-201ENST00000363265 113 ntBASIC3.19□□□□□ -1.9
LIG1P18858 MIR218-1-201ENST00000384999 110 ntBASIC3.19□□□□□ -1.9
LIG1P18858 MLLT10P1-201ENST00000418346 262 ntBASIC3.19□□□□□ -1.9
LIG1P18858 AL139132.1-201ENST00000431587 344 ntBASIC3.19□□□□□ -1.9
LIG1P18858 AL161788.1-201ENST00000441805 169 ntBASIC3.19□□□□□ -1.9
LIG1P18858 AL049873.1-201ENST00000480540 376 ntBASIC3.19□□□□□ -1.9
LIG1P18858 RPS29P21-201ENST00000496272 170 ntBASIC3.19□□□□□ -1.9
LIG1P18858 OR9P1P-201ENST00000496431 281 ntBASIC3.19□□□□□ -1.9
LIG1P18858 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.19□□□□□ -1.9
LIG1P18858 SNORA4.4-201ENST00000515921 135 ntBASIC3.19□□□□□ -1.9
LIG1P18858 RNU7-149P-201ENST00000516739 59 ntBASIC3.19□□□□□ -1.9
LIG1P18858 RNU6-856P-201ENST00000516959 98 ntBASIC3.19□□□□□ -1.9
LIG1P18858 Pinc.1-201ENST00000616452 154 ntBASIC3.19□□□□□ -1.9
LIG1P18858 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.18□□□□□ -1.9
LIG1P18858 RNU1-96P-201ENST00000364163 162 ntBASIC3.18□□□□□ -1.9
LIG1P18858 SNORD18B-201ENST00000365659 72 ntBASIC3.18□□□□□ -1.9
LIG1P18858 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
LIG1P18858 AC007064.1-201ENST00000412238 351 ntBASIC3.18□□□□□ -1.9
LIG1P18858 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.18□□□□□ -1.9
LIG1P18858 CYP2C59P-201ENST00000457790 269 ntBASIC3.18□□□□□ -1.9
LIG1P18858 CYCTP-201ENST00000504253 315 ntBASIC3.18□□□□□ -1.9
LIG1P18858 RNU2-60P-201ENST00000517290 128 ntBASIC3.18□□□□□ -1.9
LIG1P18858 MIR7106-201ENST00000612419 65 ntBASIC3.18□□□□□ -1.9
LIG1P18858 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.18□□□□□ -1.9
LIG1P18858 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
LIG1P18858 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
LIG1P18858 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
LIG1P18858 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.17□□□□□ -1.9
LIG1P18858 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LIG1P18858 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.17□□□□□ -1.9
LIG1P18858 SNORA67.1-201ENST00000364749 141 ntBASIC3.17□□□□□ -1.9
LIG1P18858 MIR520G-201ENST00000385064 90 ntBASIC3.17□□□□□ -1.9
LIG1P18858 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
LIG1P18858 SNORA9.3-201ENST00000516383 129 ntBASIC3.17□□□□□ -1.9
LIG1P18858 SCARNA13-201ENST00000516672 275 ntBASIC3.17□□□□□ -1.9
LIG1P18858 NDUFA5P6-201ENST00000542110 379 ntBASIC3.17□□□□□ -1.9
LIG1P18858 AC004486.1-201ENST00000546846 233 ntBASIC3.17□□□□□ -1.9
LIG1P18858 MTND5P34-201ENST00000568888 325 ntBASIC3.17□□□□□ -1.9
LIG1P18858 MIR3605-201ENST00000583214 100 ntBASIC3.17□□□□□ -1.9
LIG1P18858 AL365205.2-201ENST00000594586 68 ntBASIC3.17□□□□□ -1.9
LIG1P18858 AL033523.1-201ENST00000605153 153 ntBASIC3.17□□□□□ -1.9
LIG1P18858 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.17□□□□□ -1.9
LIG1P18858 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
LIG1P18858 SNORA80A-201ENST00000363922 136 ntBASIC3.16□□□□□ -1.9
LIG1P18858 RNU6-647P-201ENST00000364243 107 ntBASIC3.16□□□□□ -1.9
LIG1P18858 MIR634-201ENST00000385208 97 ntBASIC3.16□□□□□ -1.9
LIG1P18858 MIR624-201ENST00000385217 97 ntBASIC3.16□□□□□ -1.9
LIG1P18858 RNU6-220P-201ENST00000390919 107 ntBASIC3.16□□□□□ -1.9
LIG1P18858 MIR1253-201ENST00000408273 105 ntBASIC3.16□□□□□ -1.9
LIG1P18858 Y_RNA.617-201ENST00000410920 90 ntBASIC3.16□□□□□ -1.9
LIG1P18858 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.16□□□□□ -1.9
LIG1P18858 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.16□□□□□ -1.9
LIG1P18858 AL135938.1-201ENST00000443141 297 ntBASIC3.16□□□□□ -1.9
LIG1P18858 Y_RNA.690-201ENST00000516603 95 ntBASIC3.16□□□□□ -1.9
LIG1P18858 SNORA48.11-201ENST00000517015 89 ntBASIC3.16□□□□□ -1.9
LIG1P18858 AC133485.4-201ENST00000561835 220 ntBASIC3.16□□□□□ -1.9
LIG1P18858 AC138907.4-201ENST00000570107 226 ntBASIC3.16□□□□□ -1.9
LIG1P18858 ZNF861P-201ENST00000588126 639 ntBASIC3.16□□□□□ -1.9
LIG1P18858 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
LIG1P18858 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.15□□□□□ -1.9
LIG1P18858 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.15□□□□□ -1.9
LIG1P18858 MIR340-201ENST00000362125 95 ntBASIC3.15□□□□□ -1.91
LIG1P18858 Y_RNA.66-201ENST00000362862 102 ntBASIC3.15□□□□□ -1.91
LIG1P18858 Y_RNA.486-201ENST00000384398 107 ntBASIC3.15□□□□□ -1.91
LIG1P18858 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.15□□□□□ -1.91
LIG1P18858 RNU2-48P-201ENST00000410694 191 ntBASIC3.15□□□□□ -1.91
LIG1P18858 Y_RNA.630-201ENST00000411370 108 ntBASIC3.15□□□□□ -1.91
LIG1P18858 AC060773.1-201ENST00000421698 310 ntBASIC3.15□□□□□ -1.91
LIG1P18858 RNU6-1146P-201ENST00000516282 102 ntBASIC3.15□□□□□ -1.91
LIG1P18858 RNU6-1096P-201ENST00000517089 102 ntBASIC3.15□□□□□ -1.91
LIG1P18858 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.15□□□□□ -1.91
LIG1P18858 JPX_2.1-201ENST00000614161 69 ntBASIC3.15□□□□□ -1.91
LIG1P18858 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.15□□□□□ -1.91
LIG1P18858 AC010297.1-201ENST00000623948 149 ntBASIC3.15□□□□□ -1.91
LIG1P18858 FO624990.1-201ENST00000636373 85 ntBASIC3.15□□□□□ -1.91
LIG1P18858 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
LIG1P18858 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.15□□□□□ -1.91
LIG1P18858 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
LIG1P18858 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
LIG1P18858 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
LIG1P18858 MAPK10-266ENST00000641066 6555 ntBASIC3.14□□□□□ -1.91
LIG1P18858 SNORA5B-201ENST00000363786 132 ntBASIC3.14□□□□□ -1.91
LIG1P18858 SNORD58C-201ENST00000365223 64 ntBASIC3.14□□□□□ -1.91
LIG1P18858 MIR891A-201ENST00000401237 79 ntBASIC3.14□□□□□ -1.91
LIG1P18858 RNA5SP127-201ENST00000411051 133 ntBASIC3.14□□□□□ -1.91
LIG1P18858 RNU5E-3P-201ENST00000515913 68 ntBASIC3.14□□□□□ -1.91
LIG1P18858 SNORA18.4-201ENST00000516440 124 ntBASIC3.14□□□□□ -1.91
LIG1P18858 RNU6-365P-201ENST00000517113 106 ntBASIC3.14□□□□□ -1.91
LIG1P18858 MIR3670-2-201ENST00000582974 65 ntBASIC3.14□□□□□ -1.91
LIG1P18858 MIR3670-1-201ENST00000584160 65 ntBASIC3.14□□□□□ -1.91
LIG1P18858 MIR3670-3-201ENST00000584855 65 ntBASIC3.14□□□□□ -1.91
LIG1P18858 AL670379.3-201ENST00000605040 251 ntBASIC3.14□□□□□ -1.91
LIG1P18858 MIR3670-4-201ENST00000612260 65 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms