Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 Y_RNA.456-201ENST00000384232 111 ntBASIC1.96□□□□□ -2.1
LDB3O75112 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.96□□□□□ -2.1
LDB3O75112 AC245047.8-201ENST00000456455 284 ntBASIC1.96□□□□□ -2.1
LDB3O75112 RNU6-221P-201ENST00000459541 99 ntBASIC1.96□□□□□ -2.1
LDB3O75112 AC055731.1-201ENST00000474387 401 ntBASIC1.96□□□□□ -2.1
LDB3O75112 RNU2-19P-201ENST00000517288 84 ntBASIC1.96□□□□□ -2.1
LDB3O75112 MIR3684-201ENST00000579779 74 ntBASIC1.96□□□□□ -2.1
LDB3O75112 AC013412.1-201ENST00000610687 192 ntBASIC1.96□□□□□ -2.1
LDB3O75112 AC108706.1-201ENST00000611053 297 ntBASIC1.96□□□□□ -2.1
LDB3O75112 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.96□□□□□ -2.1
LDB3O75112 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.96□□□□□ -2.1
LDB3O75112 MIR6895-201ENST00000613497 78 ntBASIC1.96□□□□□ -2.1
LDB3O75112 SNORA27.1-201ENST00000362604 124 ntBASIC1.95□□□□□ -2.1
LDB3O75112 Y_RNA.75-201ENST00000362927 97 ntBASIC1.95□□□□□ -2.1
LDB3O75112 SNORA70B-201ENST00000384210 135 ntBASIC1.95□□□□□ -2.1
LDB3O75112 MIR144-201ENST00000384886 86 ntBASIC1.95□□□□□ -2.1
LDB3O75112 MIR518A2-201ENST00000384966 87 ntBASIC1.95□□□□□ -2.1
LDB3O75112 MIR29C-201ENST00000385231 88 ntBASIC1.95□□□□□ -2.1
LDB3O75112 RNU6-131P-201ENST00000391144 107 ntBASIC1.95□□□□□ -2.1
LDB3O75112 AL355497.1-201ENST00000406262 551 ntBASIC1.95□□□□□ -2.1
LDB3O75112 AL606753.1-201ENST00000427435 87 ntBASIC1.95□□□□□ -2.1
LDB3O75112 RNA5SP82-201ENST00000516707 92 ntBASIC1.95□□□□□ -2.1
LDB3O75112 AC025647.1-201ENST00000517879 253 ntBASIC1.95□□□□□ -2.1
LDB3O75112 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.95□□□□□ -2.1
LDB3O75112 MIR3658-201ENST00000636291 56 ntBASIC1.95□□□□□ -2.1
LDB3O75112 AC068647.2-201ENST00000637380 353 ntBASIC1.95□□□□□ -2.1
LDB3O75112 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
LDB3O75112 RNU6-899P-201ENST00000363947 107 ntBASIC1.94□□□□□ -2.1
LDB3O75112 RNU6-704P-201ENST00000364162 103 ntBASIC1.94□□□□□ -2.1
LDB3O75112 RNU4-84P-201ENST00000364200 139 ntBASIC1.94□□□□□ -2.1
LDB3O75112 SNORA16B-201ENST00000364674 135 ntBASIC1.94□□□□□ -2.1
LDB3O75112 RNU6-407P-201ENST00000365280 104 ntBASIC1.94□□□□□ -2.1
LDB3O75112 RNU6-160P-201ENST00000384591 107 ntBASIC1.94□□□□□ -2.1
LDB3O75112 MIR873-201ENST00000401120 77 ntBASIC1.94□□□□□ -2.1
LDB3O75112 RN7SKP192-201ENST00000411291 327 ntBASIC1.94□□□□□ -2.1
LDB3O75112 RNU1-131P-201ENST00000458943 161 ntBASIC1.94□□□□□ -2.1
LDB3O75112 RPS26P55-201ENST00000471178 356 ntBASIC1.94□□□□□ -2.1
LDB3O75112 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.94□□□□□ -2.1
LDB3O75112 RNU1-41P-201ENST00000516161 162 ntBASIC1.94□□□□□ -2.1
LDB3O75112 RNU1-48P-201ENST00000516400 162 ntBASIC1.94□□□□□ -2.1
LDB3O75112 SNORD116-25-201ENST00000516517 92 ntBASIC1.94□□□□□ -2.1
LDB3O75112 MIR4648-201ENST00000580107 72 ntBASIC1.94□□□□□ -2.1
LDB3O75112 AC007229.1-201ENST00000590455 412 ntBASIC1.94□□□□□ -2.1
LDB3O75112 Y_RNA.783-201ENST00000613546 102 ntBASIC1.94□□□□□ -2.1
LDB3O75112 MIR219B-201ENST00000637023 88 ntBASIC1.94□□□□□ -2.1
LDB3O75112 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
LDB3O75112 RNY1P11-201ENST00000363759 113 ntBASIC1.93□□□□□ -2.1
LDB3O75112 Y_RNA.229-201ENST00000364347 113 ntBASIC1.93□□□□□ -2.1
LDB3O75112 RNU6-275P-201ENST00000364910 107 ntBASIC1.93□□□□□ -2.1
LDB3O75112 RNU6-578P-201ENST00000390980 103 ntBASIC1.93□□□□□ -2.1
LDB3O75112 Y_RNA.580-201ENST00000391004 95 ntBASIC1.93□□□□□ -2.1
LDB3O75112 RNU6-710P-201ENST00000410424 105 ntBASIC1.93□□□□□ -2.1
LDB3O75112 RNA5SP511-201ENST00000410487 115 ntBASIC1.93□□□□□ -2.1
LDB3O75112 AC008134.1-201ENST00000420943 193 ntBASIC1.93□□□□□ -2.1
LDB3O75112 HSPE1P21-201ENST00000438283 308 ntBASIC1.93□□□□□ -2.1
LDB3O75112 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.93□□□□□ -2.1
LDB3O75112 AC010409.1-201ENST00000487382 476 ntBASIC1.93□□□□□ -2.1
LDB3O75112 RPS29P21-201ENST00000496272 170 ntBASIC1.93□□□□□ -2.1
LDB3O75112 RNU7-115P-201ENST00000516433 55 ntBASIC1.93□□□□□ -2.1
LDB3O75112 RNU6-1007P-201ENST00000516586 107 ntBASIC1.93□□□□□ -2.1
LDB3O75112 RNU6-856P-201ENST00000516959 98 ntBASIC1.93□□□□□ -2.1
LDB3O75112 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.93□□□□□ -2.1
LDB3O75112 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.93□□□□□ -2.1
LDB3O75112 AC132825.6-201ENST00000638861 357 ntBASIC1.93□□□□□ -2.1
LDB3O75112 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
LDB3O75112 Y_RNA.23-201ENST00000362496 106 ntBASIC1.92□□□□□ -2.1
LDB3O75112 SNORD115-3-201ENST00000363100 82 ntBASIC1.92□□□□□ -2.1
LDB3O75112 Y_RNA.121-201ENST00000363309 113 ntBASIC1.92□□□□□ -2.1
LDB3O75112 RNU6-1205P-201ENST00000363625 106 ntBASIC1.92□□□□□ -2.1
LDB3O75112 SNORD114-6-201ENST00000364393 72 ntBASIC1.92□□□□□ -2.1
LDB3O75112 RNU6-312P-201ENST00000364629 107 ntBASIC1.92□□□□□ -2.1
LDB3O75112 RNA5SP160-201ENST00000364866 120 ntBASIC1.92□□□□□ -2.1
LDB3O75112 RNU6-1240P-201ENST00000365155 104 ntBASIC1.92□□□□□ -2.1
LDB3O75112 SNORD113-1-201ENST00000365321 69 ntBASIC1.92□□□□□ -2.1
LDB3O75112 RNU6-117P-201ENST00000365415 107 ntBASIC1.92□□□□□ -2.1
LDB3O75112 SNORA6-201ENST00000384033 151 ntBASIC1.92□□□□□ -2.1
LDB3O75112 RNU6-136P-201ENST00000384663 107 ntBASIC1.92□□□□□ -2.1
LDB3O75112 SNORA8.3-201ENST00000384679 139 ntBASIC1.92□□□□□ -2.1
LDB3O75112 MIR1278-201ENST00000408753 81 ntBASIC1.92□□□□□ -2.1
LDB3O75112 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.92□□□□□ -2.1
LDB3O75112 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.92□□□□□ -2.1
LDB3O75112 RNA5SP20-201ENST00000515976 84 ntBASIC1.92□□□□□ -2.1
LDB3O75112 Y_RNA.797-201ENST00000515977 94 ntBASIC1.92□□□□□ -2.1
LDB3O75112 IGKV3-31-201ENST00000523109 329 ntBASIC1.92□□□□□ -2.1
LDB3O75112 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.92□□□□□ -2.1
LDB3O75112 MIR4744-201ENST00000581563 82 ntBASIC1.92□□□□□ -2.1
LDB3O75112 Y_RNA.802-201ENST00000614892 130 ntBASIC1.92□□□□□ -2.1
LDB3O75112 MIR548AY-201ENST00000617669 107 ntBASIC1.92□□□□□ -2.1
LDB3O75112 AP000553.5-201ENST00000641933 54 ntBASIC1.92□□□□□ -2.1
LDB3O75112 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
LDB3O75112 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.91□□□□□ -2.1
LDB3O75112 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.91□□□□□ -2.1
LDB3O75112 RNU6-1164P-201ENST00000364428 107 ntBASIC1.91□□□□□ -2.1
LDB3O75112 MIR613-201ENST00000385248 95 ntBASIC1.91□□□□□ -2.1
LDB3O75112 SNORA36B-201ENST00000410438 131 ntBASIC1.91□□□□□ -2.1
LDB3O75112 RNA5SP338-201ENST00000410495 85 ntBASIC1.91□□□□□ -2.1
LDB3O75112 TMSB4XP3-201ENST00000445144 114 ntBASIC1.91□□□□□ -2.1
LDB3O75112 AL021397.1-201ENST00000451806 248 ntBASIC1.91□□□□□ -2.1
LDB3O75112 RNU6-717P-201ENST00000459076 104 ntBASIC1.91□□□□□ -2.1
LDB3O75112 AC010598.1-201ENST00000510378 103 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms