Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC108729.3-201ENST00000513484 108 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 Y_RNA.711-201ENST00000516993 102 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.68□□□□□ -2.14
HOXC11O43248 MIR3171-201ENST00000584270 74 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 AP001485.1-201ENST00000604799 199 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 PRR13P7-201ENST00000605538 430 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 SNORD113-5-201ENST00000607261 78 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 AL121890.5-201ENST00000620848 304 ntBASIC1.68□□□□□ -2.14
HOXC11O43248 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.68□□□□□ -2.14
HOXC11O43248 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HOXC11O43248 Y_RNA.202-201ENST00000364083 110 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 SNORD116-13-201ENST00000384408 92 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 MIR660-201ENST00000385235 97 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 MIR1252-201ENST00000408861 65 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 AC027119.1-201ENST00000440877 241 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.67□□□□□ -2.14
HOXC11O43248 RPS4XP11-201ENST00000446897 772 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 RNU6-397P-201ENST00000516226 104 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 RNA5SP168-201ENST00000516642 112 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 RNU6-902P-201ENST00000517212 91 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 AC024614.2-201ENST00000577584 372 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 AC104695.3-201ENST00000604052 296 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 AC005972.2-201ENST00000604690 348 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 PART1_1.1-201ENST00000611761 217 ntBASIC1.67□□□□□ -2.14
HOXC11O43248 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
HOXC11O43248 Y_RNA.183-201ENST00000363882 113 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 SNORD48-201ENST00000364953 64 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 Y_RNA.341-201ENST00000365341 102 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 RNU6-130P-201ENST00000411112 103 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 AP1B1P2-201ENST00000416196 106 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 POLR2KP2-201ENST00000438155 177 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 RNU6-1053P-201ENST00000515930 101 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.66□□□□□ -2.14
HOXC11O43248 AC011604.1-201ENST00000545978 196 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 DEFB117-201ENST00000602356 141 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 MIR376A1-201ENST00000616574 68 ntBASIC1.66□□□□□ -2.14
HOXC11O43248 RNU4-76P-201ENST00000364509 141 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 Y_RNA.380-201ENST00000365663 111 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 RNU6-1105P-201ENST00000384774 107 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 CALM2P4-201ENST00000430810 426 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 RPS20P10-201ENST00000451209 253 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 RNU1-98P-201ENST00000458992 160 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 U8.19-201ENST00000459095 133 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 OR9P1P-201ENST00000496431 281 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 RNU6-1046P-201ENST00000516538 107 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 Y_RNA.701-201ENST00000516812 110 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 SNORA40.15-201ENST00000516884 107 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 SNORD53B-201ENST00000577887 78 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 AC044792.1-201ENST00000593294 196 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 AL365434.2-201ENST00000607979 234 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 AC004832.4-201ENST00000608952 331 ntBASIC1.65□□□□□ -2.15
HOXC11O43248 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
HOXC11O43248 SNORD81.1-201ENST00000363064 77 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 Y_RNA.158-201ENST00000363651 101 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 Y_RNA.456-201ENST00000384232 111 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 RNU6-424P-201ENST00000384367 105 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 RNU6-997P-201ENST00000384725 107 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 SNORA12.1-201ENST00000390873 148 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 RNU6-1248P-201ENST00000391096 64 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 RN7SKP101-201ENST00000411376 320 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 RNU7-12P-201ENST00000516030 62 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 Y_RNA.676-201ENST00000516393 96 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 RNU6-897P-201ENST00000517135 105 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 DNAJC19P9-201ENST00000555084 351 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 MIR4778-201ENST00000577635 80 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 AL356055.1-201ENST00000602528 446 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 AL512598.1-201ENST00000610158 273 ntBASIC1.64□□□□□ -2.15
HOXC11O43248 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.64□□□□□ -2.15
HOXC11O43248 SNORD68-201ENST00000363214 84 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 Y_RNA.152-201ENST00000363578 100 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 Y_RNA.172-201ENST00000363765 102 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 RNU4-41P-201ENST00000364426 143 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 Y_RNA.383-201ENST00000383855 97 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 RNU6-1080P-201ENST00000383982 107 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 U8.16-201ENST00000391279 133 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.63□□□□□ -2.15
HOXC11O43248 AC136932.1-201ENST00000574771 208 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 AC068647.2-201ENST00000637380 353 ntBASIC1.63□□□□□ -2.15
HOXC11O43248 AL161722.3-201ENST00000605789 2983 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 Y_RNA.4-201ENST00000362333 112 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 SNORD113-8-201ENST00000363497 74 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 RNU6-60P-201ENST00000364792 103 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 Y_RNA.455-201ENST00000384230 98 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 SNORA72-201ENST00000384339 132 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 Y_RNA.602-201ENST00000410535 92 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 AL135790.2-201ENST00000437701 267 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 RNU7-95P-201ENST00000459222 64 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 RNU7-116P-201ENST00000516940 62 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.62□□□□□ -2.15
HOXC11O43248 AC020661.2-201ENST00000560114 134 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 AL645939.4-201ENST00000604495 135 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 RAC1P9-201ENST00000604990 392 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 BX248123.2-201ENST00000606318 124 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 AC106754.2-201ENST00000623006 233 ntBASIC1.62□□□□□ -2.15
HOXC11O43248 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
HOXC11O43248 RNU6-199P-201ENST00000362954 107 ntBASIC1.61□□□□□ -2.15
HOXC11O43248 Y_RNA.216-201ENST00000364205 93 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms