Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MIR4769-201ENST00000584126 77 ntBASIC2.52□□□□□ -2.01
CBX4O00257 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CBX4O00257 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CBX4O00257 RNU6-682P-201ENST00000363843 106 ntBASIC2.51□□□□□ -2.01
CBX4O00257 RNA5SP456-201ENST00000364002 114 ntBASIC2.51□□□□□ -2.01
CBX4O00257 Y_RNA.203-201ENST00000364106 102 ntBASIC2.51□□□□□ -2.01
CBX4O00257 SNORA3A-201ENST00000364113 130 ntBASIC2.51□□□□□ -2.01
CBX4O00257 RNU6-886P-201ENST00000384319 105 ntBASIC2.51□□□□□ -2.01
CBX4O00257 MIR616-201ENST00000385293 97 ntBASIC2.51□□□□□ -2.01
CBX4O00257 Y_RNA.797-201ENST00000515977 94 ntBASIC2.51□□□□□ -2.01
CBX4O00257 RNU6-1291P-201ENST00000516591 104 ntBASIC2.51□□□□□ -2.01
CBX4O00257 AL358944.1-201ENST00000528537 144 ntBASIC2.51□□□□□ -2.01
CBX4O00257 MIR4529-201ENST00000578110 78 ntBASIC2.51□□□□□ -2.01
CBX4O00257 MIR5094-201ENST00000578766 85 ntBASIC2.51□□□□□ -2.01
CBX4O00257 AC091178.2-201ENST00000584401 117 ntBASIC2.51□□□□□ -2.01
CBX4O00257 AL929325.1-201ENST00000603096 117 ntBASIC2.51□□□□□ -2.01
CBX4O00257 CTSLP2-204ENST00000629029 392 ntBASIC2.51□□□□□ -2.01
CBX4O00257 U6.106-201ENST00000636360 105 ntBASIC2.51□□□□□ -2.01
CBX4O00257 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.51□□□□□ -2.01
CBX4O00257 Y_RNA.180-201ENST00000363867 113 ntBASIC2.5□□□□□ -2.01
CBX4O00257 Y_RNA.182-201ENST00000363880 111 ntBASIC2.5□□□□□ -2.01
CBX4O00257 Y_RNA.229-201ENST00000364347 113 ntBASIC2.5□□□□□ -2.01
CBX4O00257 Y_RNA.572-201ENST00000384757 98 ntBASIC2.5□□□□□ -2.01
CBX4O00257 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CBX4O00257 RNA5SP496-201ENST00000391240 109 ntBASIC2.5□□□□□ -2.01
CBX4O00257 AL359511.1-201ENST00000402970 211 ntBASIC2.5□□□□□ -2.01
CBX4O00257 RNU4-53P-201ENST00000410828 140 ntBASIC2.5□□□□□ -2.01
CBX4O00257 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.5□□□□□ -2.01
CBX4O00257 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.5□□□□□ -2.01
CBX4O00257 AC023449.1-201ENST00000454464 154 ntBASIC2.5□□□□□ -2.01
CBX4O00257 UBL5P3-201ENST00000475112 231 ntBASIC2.5□□□□□ -2.01
CBX4O00257 MIR4744-201ENST00000581563 82 ntBASIC2.5□□□□□ -2.01
CBX4O00257 MIR4524B-201ENST00000581569 115 ntBASIC2.5□□□□□ -2.01
CBX4O00257 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.5□□□□□ -2.01
CBX4O00257 AL391903.3-201ENST00000612158 163 ntBASIC2.5□□□□□ -2.01
CBX4O00257 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
CBX4O00257 snoU2_19.4-201ENST00000364329 80 ntBASIC2.49□□□□□ -2.01
CBX4O00257 Y_RNA.240-201ENST00000364469 95 ntBASIC2.49□□□□□ -2.01
CBX4O00257 MIR504-201ENST00000385065 83 ntBASIC2.49□□□□□ -2.01
CBX4O00257 MIR524-201ENST00000385242 87 ntBASIC2.49□□□□□ -2.01
CBX4O00257 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
CBX4O00257 AC245047.8-201ENST00000456455 284 ntBASIC2.49□□□□□ -2.01
CBX4O00257 snoU13.15-201ENST00000459407 104 ntBASIC2.49□□□□□ -2.01
CBX4O00257 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.49□□□□□ -2.01
CBX4O00257 RNU6-237P-201ENST00000515985 71 ntBASIC2.49□□□□□ -2.01
CBX4O00257 RNU6-1219P-201ENST00000516143 112 ntBASIC2.49□□□□□ -2.01
CBX4O00257 RNU6-1007P-201ENST00000516586 107 ntBASIC2.49□□□□□ -2.01
CBX4O00257 AP002004.2-201ENST00000531656 154 ntBASIC2.49□□□□□ -2.01
CBX4O00257 JPX_2.1-201ENST00000614161 69 ntBASIC2.49□□□□□ -2.01
CBX4O00257 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CBX4O00257 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
CBX4O00257 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CBX4O00257 RNU1-51P-201ENST00000365345 176 ntBASIC2.48□□□□□ -2.01
CBX4O00257 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.48□□□□□ -2.01
CBX4O00257 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.48□□□□□ -2.01
CBX4O00257 SUMO1P4-201ENST00000429430 302 ntBASIC2.48□□□□□ -2.01
CBX4O00257 RNU7-193P-201ENST00000516723 65 ntBASIC2.48□□□□□ -2.01
CBX4O00257 RNU2-56P-201ENST00000516826 190 ntBASIC2.48□□□□□ -2.01
CBX4O00257 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.48□□□□□ -2.01
CBX4O00257 AC084364.2-201ENST00000546924 395 ntBASIC2.48□□□□□ -2.01
CBX4O00257 U1.36-201ENST00000620684 176 ntBASIC2.48□□□□□ -2.01
CBX4O00257 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CBX4O00257 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
CBX4O00257 Y_RNA.75-201ENST00000362927 97 ntBASIC2.47□□□□□ -2.01
CBX4O00257 RNU6-1080P-201ENST00000383982 107 ntBASIC2.47□□□□□ -2.01
CBX4O00257 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CBX4O00257 SNORA48.1-201ENST00000390879 135 ntBASIC2.47□□□□□ -2.01
CBX4O00257 AC234781.5-201ENST00000508429 271 ntBASIC2.47□□□□□ -2.01
CBX4O00257 SNORA31.15-201ENST00000516771 132 ntBASIC2.47□□□□□ -2.01
CBX4O00257 SNORA31.25-201ENST00000517242 134 ntBASIC2.47□□□□□ -2.01
CBX4O00257 RNU1-104P-201ENST00000517280 175 ntBASIC2.47□□□□□ -2.01
CBX4O00257 MIR5194-201ENST00000582634 120 ntBASIC2.47□□□□□ -2.01
CBX4O00257 AC078899.2-201ENST00000595282 212 ntBASIC2.47□□□□□ -2.01
CBX4O00257 AC010297.1-201ENST00000623948 149 ntBASIC2.47□□□□□ -2.01
CBX4O00257 AC131280.1-202ENST00000624067 4211 ntBASIC2.46□□□□□ -2.02
CBX4O00257 RNU6-578P-201ENST00000390980 103 ntBASIC2.46□□□□□ -2.02
CBX4O00257 RNU6-1228P-201ENST00000391014 107 ntBASIC2.46□□□□□ -2.02
CBX4O00257 RN7SKP101-201ENST00000411376 320 ntBASIC2.46□□□□□ -2.02
CBX4O00257 AC245047.3-201ENST00000429428 127 ntBASIC2.46□□□□□ -2.02
CBX4O00257 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.46□□□□□ -2.02
CBX4O00257 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.46□□□□□ -2.02
CBX4O00257 RPL23AP91-201ENST00000569211 455 ntBASIC2.46□□□□□ -2.02
CBX4O00257 AC245884.12-201ENST00000615364 59 ntBASIC2.46□□□□□ -2.02
CBX4O00257 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.45□□□□□ -2.02
CBX4O00257 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.45□□□□□ -2.02
CBX4O00257 SNORA1B-201ENST00000362535 133 ntBASIC2.45□□□□□ -2.02
CBX4O00257 RNU6-275P-201ENST00000364910 107 ntBASIC2.45□□□□□ -2.02
CBX4O00257 DEFA7P-201ENST00000382676 285 ntBASIC2.45□□□□□ -2.02
CBX4O00257 Y_RNA.412-201ENST00000384001 104 ntBASIC2.45□□□□□ -2.02
CBX4O00257 RNY3P5-201ENST00000384127 102 ntBASIC2.45□□□□□ -2.02
CBX4O00257 AL606845.1-201ENST00000404881 255 ntBASIC2.45□□□□□ -2.02
CBX4O00257 MIR1289-2-201ENST00000408360 111 ntBASIC2.45□□□□□ -2.02
CBX4O00257 RN7SKP223-201ENST00000410582 62 ntBASIC2.45□□□□□ -2.02
CBX4O00257 MTND2P29-201ENST00000438595 412 ntBASIC2.45□□□□□ -2.02
CBX4O00257 RPS12P2-201ENST00000439728 269 ntBASIC2.45□□□□□ -2.02
CBX4O00257 AL049830.1-201ENST00000468034 425 ntBASIC2.45□□□□□ -2.02
CBX4O00257 AC026436.1-201ENST00000510537 270 ntBASIC2.45□□□□□ -2.02
CBX4O00257 SCARNA8-201ENST00000515924 131 ntBASIC2.45□□□□□ -2.02
CBX4O00257 RNU6-453P-201ENST00000516819 85 ntBASIC2.45□□□□□ -2.02
CBX4O00257 MRPS18CP4-201ENST00000535821 231 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms