Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 MIR423-201ENST00000362201 94 ntBASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 MIR591-201ENST00000385290 95 ntBASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 MIR1251-201ENST00000408552 70 ntBASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 Y_RNA.607-201ENST00000410597 98 ntBASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 POLR2J4-204ENST00000418424 324 ntBASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 AC009414.1-201ENST00000427200 443 ntBASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 RNU6-1041P-201ENST00000516254 102 ntBASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 CYCSP30-201ENST00000546447 172 ntBASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHB3Q9Y5E6 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 ICE2P2-201ENST00000483823 2787 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 AC008264.2-201ENST00000610193 3731 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 RNU1-18P-201ENST00000363062 164 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 RNU6-509P-201ENST00000363519 107 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 SNORD35B-201ENST00000363660 87 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 SNORD46.1-201ENST00000364139 104 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 RNA5SP97-201ENST00000365006 84 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 SNORD58A-201ENST00000383875 65 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 SNORA80E-201ENST00000384744 137 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 SNORA11.1-201ENST00000408133 129 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 RHEBP3-201ENST00000411920 351 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 AL159169.1-201ENST00000421119 127 ntBASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.81□□□□□ -1.8
PCDHB3Q9Y5E6 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 SNORA27-201ENST00000384323 126 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 U8.15-201ENST00000390947 134 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 AL161788.1-201ENST00000441805 169 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 U3.44-201ENST00000458938 192 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 RNU7-94P-201ENST00000459576 63 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 RNU6-998P-201ENST00000515894 101 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 SCARNA3-201ENST00000517097 143 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 AC244205.2-202ENST00000635781 342 ntBASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.8□□□□□ -1.8
PCDHB3Q9Y5E6 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 AC091564.4-201ENST00000533934 2194 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 Y_RNA.94-201ENST00000363068 106 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 Y_RNA.316-201ENST00000365118 111 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 RNU6-616P-201ENST00000384353 107 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 MIR4439-201ENST00000583746 80 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 ELOCP29-201ENST00000588193 334 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 SNORA51-201ENST00000606420 132 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 AL353149.1-201ENST00000610667 244 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 MIR8058-201ENST00000615737 89 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 AL591424.2-201ENST00000617023 128 ntBASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.79□□□□□ -1.8
PCDHB3Q9Y5E6 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 AC092881.1-201ENST00000638218 2733 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 Y_RNA.430-201ENST00000384081 110 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 SNORA8-201ENST00000384574 139 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 RNA5SP323-201ENST00000391094 133 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 RNU7-96P-201ENST00000459535 64 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 RN7SL323P-201ENST00000494712 295 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 SNORA31.1-201ENST00000515993 133 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 SNORA31.5-201ENST00000516190 133 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 AC096720.1-201ENST00000604441 183 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHB3Q9Y5E6 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 RNU6-1313P-201ENST00000362622 102 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 Y_RNA.171-201ENST00000363760 102 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 SNORA70.4-201ENST00000365509 134 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 MIR30B-201ENST00000384850 88 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 SNORA3.3-201ENST00000408712 125 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 RNU7-113P-201ENST00000459273 62 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 RNU6-1006P-201ENST00000516998 103 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 RNA5SP179-201ENST00000517284 121 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 YPEL5P3-201ENST00000547227 352 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 AC019176.2-201ENST00000611579 315 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 CTSLP2-204ENST00000629029 392 ntBASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
PCDHB3Q9Y5E6 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms