Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC106754.2-201ENST00000623006 233 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 AC091925.1-201ENST00000623204 462 ntBASIC1.48□□□□□ -2.17
VPS28Q9UK41 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
VPS28Q9UK41 Y_RNA.58-201ENST00000362807 102 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 RNU6-199P-201ENST00000362954 107 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 Y_RNA.154-201ENST00000363624 102 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 RNU6-324P-201ENST00000363957 106 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 Y_RNA.252-201ENST00000364556 101 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 RNY3P1-201ENST00000365085 102 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 RNU1-115P-201ENST00000365329 160 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 RNY3-201ENST00000365484 102 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 Y_RNA.446-201ENST00000384178 104 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 U8.16-201ENST00000391279 133 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 AL354751.2-201ENST00000415471 210 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 AL162725.1-201ENST00000435405 301 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 AC009474.2-201ENST00000451383 136 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 AL117351.2-201ENST00000513571 157 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 AP001094.1-201ENST00000579805 193 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 AC092447.9-201ENST00000603395 144 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 MIR7974-201ENST00000615835 79 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 MIR8065-201ENST00000620577 100 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 AC005592.1-201ENST00000566527 1640 ntBASIC1.47□□□□□ -2.17
VPS28Q9UK41 Y_RNA.496-201ENST00000384444 101 ntBASIC1.46□□□□□ -2.18
VPS28Q9UK41 RNA5SP511-201ENST00000410487 115 ntBASIC1.46□□□□□ -2.18
VPS28Q9UK41 RNU6-955P-201ENST00000410497 104 ntBASIC1.46□□□□□ -2.18
VPS28Q9UK41 SNRPGP13-201ENST00000442212 177 ntBASIC1.46□□□□□ -2.18
VPS28Q9UK41 AL513534.2-201ENST00000603836 250 ntBASIC1.46□□□□□ -2.18
VPS28Q9UK41 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
VPS28Q9UK41 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
VPS28Q9UK41 RNU4-73P-201ENST00000363164 141 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 Y_RNA.338-201ENST00000365320 114 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.45□□□□□ -2.18
VPS28Q9UK41 RNU2-61P-201ENST00000411069 191 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 RNU6-1199P-201ENST00000411249 104 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.45□□□□□ -2.18
VPS28Q9UK41 AC108729.3-201ENST00000513484 108 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 RN7SKP295-201ENST00000517264 153 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.45□□□□□ -2.18
VPS28Q9UK41 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.45□□□□□ -2.18
VPS28Q9UK41 AC022441.3-201ENST00000605737 136 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 snoU13.31-201ENST00000607291 104 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 AC010205.1-201ENST00000616668 449 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 AC104985.2-201ENST00000620598 500 ntBASIC1.45□□□□□ -2.18
VPS28Q9UK41 MIR26B-201ENST00000362251 77 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 RNU7-12P-201ENST00000516030 62 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 SNORA40.14-201ENST00000516543 86 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 RNU6-922P-201ENST00000516753 99 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.44□□□□□ -2.18
VPS28Q9UK41 MIR4421-201ENST00000578133 69 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 MIR4795-201ENST00000584182 89 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.44□□□□□ -2.18
VPS28Q9UK41 RPS29P30-201ENST00000600975 111 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 Y_RNA.772-201ENST00000606692 102 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 AL606534.2-204ENST00000635008 178 ntBASIC1.44□□□□□ -2.18
VPS28Q9UK41 Y_RNA.5-201ENST00000362334 102 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 U8.1-201ENST00000362843 134 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 RNU4-41P-201ENST00000364426 143 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 Y_RNA.315-201ENST00000365117 102 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 Y_RNA.570-201ENST00000384750 101 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 RPL23AP36-201ENST00000413895 458 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.43□□□□□ -2.18
VPS28Q9UK41 AL160004.2-201ENST00000432935 350 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 RPS4XP11-201ENST00000446897 772 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 RNU6-322P-201ENST00000516010 103 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 RNU6-436P-201ENST00000516171 114 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 RNU4-77P-201ENST00000516692 156 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 MIR5188-201ENST00000583467 113 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.43□□□□□ -2.18
VPS28Q9UK41 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.43□□□□□ -2.18
VPS28Q9UK41 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
VPS28Q9UK41 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.42□□□□□ -2.18
VPS28Q9UK41 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.42□□□□□ -2.18
VPS28Q9UK41 SNORA7.1-201ENST00000363750 139 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 RNU6-1175P-201ENST00000365200 107 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 SNORD116-13-201ENST00000384408 92 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 Y_RNA.526-201ENST00000384572 110 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 MIR653-201ENST00000385279 96 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 Y_RNA.621-201ENST00000411065 96 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 AL390729.2-201ENST00000416137 156 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 RPEP5-201ENST00000441137 268 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 AC005042.3-201ENST00000453230 174 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 RNA5SP61-201ENST00000516453 100 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 AC090049.2-201ENST00000550377 109 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 MIR4498-201ENST00000577599 66 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 LARP7P1-201ENST00000605576 316 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 GHRLOS.1-201ENST00000610995 70 ntBASIC1.42□□□□□ -2.18
VPS28Q9UK41 MIRLET7C-201ENST00000362160 84 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 RNU4-79P-201ENST00000362764 141 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 RNU6-1105P-201ENST00000384774 107 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 Y_RNA.579-201ENST00000390939 94 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 AL451046.2-201ENST00000403074 277 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 Z98949.2-201ENST00000440996 144 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 AC022616.4-201ENST00000522985 181 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 AC019288.1-201ENST00000557918 224 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.41□□□□□ -2.18
VPS28Q9UK41 AL121655.1-201ENST00000605811 308 ntBASIC1.41□□□□□ -2.18
VPS28Q9UK41 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
VPS28Q9UK41 Y_RNA.197-201ENST00000364004 102 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 SNORA2.2-201ENST00000365473 135 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 RNU6-1080P-201ENST00000383982 107 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms