Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MIR19B1-201ENST00000384829 87 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 AL034345.1-201ENST00000407768 123 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 MRPS18CP6-201ENST00000423587 223 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 RPL17P19-201ENST00000489069 552 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 AC022493.2-201ENST00000506122 481 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 RNA5SP168-201ENST00000516642 112 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 RN7SKP49-201ENST00000516675 260 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 RNU6-1116P-201ENST00000517269 99 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 AC092794.1-201ENST00000612734 582 ntBASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.94□□□□□ -2.26
TM9SF3Q9HD45 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 Y_RNA.265-201ENST00000364677 108 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 SNORD114-24-201ENST00000365029 72 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 Y_RNA.390-201ENST00000383932 102 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 RNU6-890P-201ENST00000384121 107 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 RNU6-342P-201ENST00000384521 104 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 SNORD12-201ENST00000391002 90 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 RPEP5-201ENST00000441137 268 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 MTCO3P10-201ENST00000455912 772 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 RPL39P28-201ENST00000465655 155 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 OR9P1P-201ENST00000496431 281 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 AC116353.2-201ENST00000505332 712 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 RNU6-408P-201ENST00000515910 100 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 SNORA31.2-201ENST00000516019 134 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 RNA5SP436-201ENST00000516020 115 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 AC023442.1-201ENST00000531247 422 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 CYP3A137P-201ENST00000562436 69 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 AC091178.2-201ENST00000584401 117 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 U6atac.1-201ENST00000616025 117 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 AC073349.3-201ENST00000617616 186 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 AL513423.1-201ENST00000621695 132 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 MIR3674-201ENST00000636576 68 ntBASIC0.93□□□□□ -2.26
TM9SF3Q9HD45 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 RNU4-79P-201ENST00000362764 141 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 SNORD114-26-201ENST00000363543 72 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 RNU6-1188P-201ENST00000363795 107 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 Y_RNA.505-201ENST00000384489 102 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 MIR660-201ENST00000385235 97 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 RNU6-910P-201ENST00000390844 107 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 RNU6-1156P-201ENST00000410365 100 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 RNU2-64P-201ENST00000411315 191 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 MTCO3P19-201ENST00000415864 321 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 AC114482.1-201ENST00000418010 247 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 AC063976.4-201ENST00000421971 163 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 AL137792.2-201ENST00000443484 235 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 AC233266.1-201ENST00000454518 96 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 RNU6-917P-201ENST00000516294 104 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 Y_RNA.691-201ENST00000516611 103 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 MIR5000-201ENST00000577717 103 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 AL162424.1-201ENST00000602325 221 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 AC242852.1-201ENST00000612151 96 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 AC244015.1-201ENST00000622301 99 ntBASIC0.92□□□□□ -2.26
TM9SF3Q9HD45 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 RNU4-76P-201ENST00000364509 141 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 RNU6-708P-201ENST00000384217 107 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 RNU6-424P-201ENST00000384367 105 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 AC096644.2-201ENST00000429278 159 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 Y_RNA.635-201ENST00000459041 101 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 RNU7-94P-201ENST00000459576 63 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 AC074133.1-201ENST00000515696 183 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 RNU6-947P-201ENST00000516264 106 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 RNU6-966P-201ENST00000516479 104 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 RNU2-56P-201ENST00000516826 190 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 MIR4698-201ENST00000577795 80 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 AC005899.2-201ENST00000584353 90 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 AL020996.3-201ENST00000606617 222 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 GHRLOS.1-201ENST00000610995 70 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 AC011476.5-201ENST00000615594 130 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 AC006435.5-201ENST00000624486 112 ntBASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
TM9SF3Q9HD45 RNU6-117P-201ENST00000365415 107 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 Y_RNA.474-201ENST00000384341 102 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 SNORD41-201ENST00000386967 70 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 RNA5SP475-201ENST00000410568 110 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 AC104332.1-201ENST00000440471 797 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 AC048334.1-201ENST00000477975 159 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 ACA64.5-201ENST00000516207 127 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 RPL21P9-201ENST00000556149 474 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 AL117336.2-201ENST00000602435 335 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 AC022306.2-201ENST00000617563 647 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 MTND4LP32-201ENST00000636111 270 ntBASIC0.9□□□□□ -2.27
TM9SF3Q9HD45 Y_RNA.101-201ENST00000363154 102 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms