Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 MIR548O-201ENST00000408583 114 ntBASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 AC007064.1-201ENST00000412238 351 ntBASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 SNRPGP14-201ENST00000435400 219 ntBASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 AC104389.3-201ENST00000445629 235 ntBASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 RNU6-579P-201ENST00000516879 102 ntBASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 AC022695.1-201ENST00000522089 237 ntBASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.34□□□□□ -1.87
DEPDC4Q8N2C3 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
DEPDC4Q8N2C3 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 AC068647.1-201ENST00000489539 2265 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 MFSD8-233ENST00000641482 4860 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 AC073346.2-201ENST00000624724 2058 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 Y_RNA.35-201ENST00000362601 101 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 MIR34B-201ENST00000385076 84 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 AC245047.3-201ENST00000429428 127 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 HMGN2P32-201ENST00000444648 269 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 TRBV12-1-201ENST00000479785 344 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 AC110768.1-201ENST00000509222 400 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 SNORA70.24-201ENST00000517233 118 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 IGKV1-22-201ENST00000524313 326 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 AL356274.2-201ENST00000624379 3752 ntBASIC3.33□□□□□ -1.88
DEPDC4Q8N2C3 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 RNU6-1084P-201ENST00000362498 107 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 AC107083.1-201ENST00000439643 279 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 Z96811.1-201ENST00000445880 108 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 RPS26P48-201ENST00000491713 339 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 AC026403.1-201ENST00000518938 295 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 MIR3613-201ENST00000579844 87 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 MIR3200-201ENST00000580767 85 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 AP000553.6-201ENST00000641242 118 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 AC009093.8-201ENST00000641769 292 ntBASIC3.32□□□□□ -1.88
DEPDC4Q8N2C3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 MIR30E-201ENST00000362104 92 ntBASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 RNU1-58P-201ENST00000362413 163 ntBASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 RNU6-268P-201ENST00000364174 107 ntBASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 RNU6-1189P-201ENST00000383958 107 ntBASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 AC022149.2-201ENST00000621061 203 ntBASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 AC022513.1-201ENST00000624512 117 ntBASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
DEPDC4Q8N2C3 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 SNORD115-28-201ENST00000363931 81 ntBASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 MIR634-201ENST00000385208 97 ntBASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 AC069257.2-201ENST00000441819 155 ntBASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 SNORD45.4-201ENST00000516629 73 ntBASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 AC004486.1-201ENST00000546846 233 ntBASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 MIR5187-201ENST00000583479 76 ntBASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 MIR4298-201ENST00000584380 73 ntBASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 SNORA28-201ENST00000606769 126 ntBASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
DEPDC4Q8N2C3 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 Y_RNA.265-201ENST00000364677 108 ntBASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 RNU6-805P-201ENST00000365643 106 ntBASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 RPL21P3-201ENST00000395517 478 ntBASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 RN7SL442P-201ENST00000473804 320 ntBASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 COX6CP6-201ENST00000490840 228 ntBASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 MIR4679-2-201ENST00000578358 77 ntBASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 AL137067.1-201ENST00000615933 120 ntBASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 MIR376A2-201ENST00000636782 80 ntBASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.29□□□□□ -1.88
DEPDC4Q8N2C3 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 RNU6-1019P-201ENST00000364424 107 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 RNU6-147P-201ENST00000383983 107 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 Y_RNA.528-201ENST00000384575 108 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 Y_RNA.547-201ENST00000384654 119 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 SNORA80E-201ENST00000384744 137 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 MIR1263-201ENST00000408324 86 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 AC092185.1-201ENST00000491371 97 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 RN7SKP18-201ENST00000516005 275 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 RNU1-95P-201ENST00000516357 160 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 RNU6-412P-201ENST00000516434 106 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms