Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MTND4P3-201ENST00000417829 541 ntBASIC-1.85□□□□□ -2.71
LINC00643Q86TS7 RNA5SP20-201ENST00000515976 84 ntBASIC-1.85□□□□□ -2.71
LINC00643Q86TS7 RNA5SP216-201ENST00000516111 123 ntBASIC-1.85□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.13-201ENST00000362403 112 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.205-201ENST00000364128 113 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 RNU6-1303P-201ENST00000364841 107 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 RNU6-1336P-201ENST00000383886 109 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 RNU6-291P-201ENST00000384720 107 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 MIR635-201ENST00000384830 98 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 SNORD93-201ENST00000408813 74 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 BX276092.1-201ENST00000427368 251 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 AL117351.1-201ENST00000438864 766 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 AC126544.2-201ENST00000625174 749 ntBASIC-1.86□□□□□ -2.71
LINC00643Q86TS7 RNU6-462P-201ENST00000362659 105 ntBASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 RNU6-407P-201ENST00000365280 104 ntBASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 SNORA20B-201ENST00000384220 132 ntBASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 AC114878.1-201ENST00000441166 358 ntBASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 MTND4P18-201ENST00000447010 465 ntBASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 RNU6-685P-201ENST00000517088 95 ntBASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 AC068880.4-201ENST00000623082 495 ntBASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 MTND4P12-201ENST00000498999 1377 ntBASIC-1.87□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.1-201ENST00000352915 104 ntBASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.112-201ENST00000363250 102 ntBASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 RNA5SP368-201ENST00000364298 116 ntBASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.536-201ENST00000384621 113 ntBASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.621-201ENST00000411065 96 ntBASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 RNU6-1199P-201ENST00000411249 104 ntBASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 AC006210.1-201ENST00000424882 111 ntBASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 MIR378F-201ENST00000578143 78 ntBASIC-1.88□□□□□ -2.71
LINC00643Q86TS7 SNORD56.2-201ENST00000363242 71 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 RNU6-24P-201ENST00000384440 107 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 SNORD38B-201ENST00000384690 67 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 RNU6-535P-201ENST00000384722 107 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 MIR522-201ENST00000385071 87 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 U8.17-201ENST00000391292 132 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 SNORD110-201ENST00000408189 75 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 RNU2-11P-201ENST00000459191 187 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 snoU13.2-201ENST00000459201 104 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 MTCO3P38-201ENST00000468910 766 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 AC010587.1-201ENST00000505809 469 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 AC123904.2-201ENST00000548059 300 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 AC140658.3-201ENST00000567603 271 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 ZNF92P2-201ENST00000600543 1059 ntBASIC-1.89□□□□□ -2.71
LINC00643Q86TS7 MIR30D-201ENST00000362283 70 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.368-201ENST00000365547 113 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 RNU6-245P-201ENST00000384020 107 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 AL137792.2-201ENST00000443484 235 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 RNU6-329P-201ENST00000459618 107 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 RNU6-1007P-201ENST00000516586 107 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 AC107934.1-201ENST00000522215 217 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 MIR548AX-201ENST00000580117 73 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 MIR6082-201ENST00000613604 109 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 MIR6738-201ENST00000619620 64 ntBASIC-1.9□□□□□ -2.71
LINC00643Q86TS7 Y_RNA.46-201ENST00000362695 102 ntBASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 RNU6-61P-201ENST00000365528 109 ntBASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 RNU6-926P-201ENST00000384075 107 ntBASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 SNORD38C-201ENST00000384381 69 ntBASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 RNU6-136P-201ENST00000384663 107 ntBASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 RNU6-847P-201ENST00000411115 108 ntBASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 AC019226.2-201ENST00000625973 424 ntBASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 AC068137.4-201ENST00000638485 296 ntBASIC-1.91□□□□□ -2.72
LINC00643Q86TS7 Y_RNA.796-201ENST00000364268 102 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 Y_RNA.799-201ENST00000364992 102 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 RNU6-1286P-201ENST00000383871 107 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 Y_RNA.415-201ENST00000384012 112 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 RNU6-901P-201ENST00000384593 106 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 MIR9-2-201ENST00000384838 87 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 RNU6-721P-201ENST00000410155 105 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 ERLEC1P1-201ENST00000433806 578 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 MTND1P12-201ENST00000455231 147 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 AC018710.1-201ENST00000506509 158 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 RNU6-1102P-201ENST00000516149 96 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 RNA5SP470-201ENST00000516463 106 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 RNU6-765P-201ENST00000516916 99 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 AL355297.3-201ENST00000604082 446 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 MIR6851-201ENST00000617060 67 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 AC127459.3-201ENST00000624328 466 ntBASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 SRP54-214ENST00000630962 162 ntTSL 5 BASIC-1.92□□□□□ -2.72
LINC00643Q86TS7 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.93□□□□□ -2.72
LINC00643Q86TS7 RNU6-117P-201ENST00000365415 107 ntBASIC-1.93□□□□□ -2.72
LINC00643Q86TS7 RNU6-708P-201ENST00000384217 107 ntBASIC-1.93□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 195 ms