Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SNORD78.2-201ENST00000391076 69 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 MTND1P14-201ENST00000427400 950 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.55□□□□□ -2.16
NPHP3Q7Z494 FCF1P4-201ENST00000448326 183 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 RNU1-98P-201ENST00000458992 160 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 RPS27P22-201ENST00000478056 241 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AC010598.1-201ENST00000510378 103 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 RNU7-128P-201ENST00000517247 62 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AC023442.1-201ENST00000531247 422 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.55□□□□□ -2.16
NPHP3Q7Z494 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AC022432.1-201ENST00000595739 310 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AC240442.1-201ENST00000616055 283 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 U6.73-201ENST00000619194 103 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 MIR8063-201ENST00000621930 81 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AL160413.1-201ENST00000622780 310 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AC090574.1-201ENST00000623186 233 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AL606534.2-204ENST00000635008 178 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 U6.115-201ENST00000636045 103 ntBASIC1.55□□□□□ -2.16
NPHP3Q7Z494 AC091812.1-201ENST00000432235 1948 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 MIR373-201ENST00000362273 69 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 RNU6-797P-201ENST00000363101 109 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 RNU1-115P-201ENST00000365329 160 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.395-201ENST00000383945 109 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 RNU6-20P-201ENST00000384106 107 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 RNU6-474P-201ENST00000384243 107 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 RNU6-360P-201ENST00000390944 104 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.54□□□□□ -2.16
NPHP3Q7Z494 JTBP1-201ENST00000441314 247 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 RNU1-142P-201ENST00000516682 145 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 MIR4438-201ENST00000585271 93 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 AP001485.1-201ENST00000604799 199 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 AL359075.3-201ENST00000613288 217 ntBASIC1.54□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.101-201ENST00000363154 102 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 RNU6-626P-201ENST00000363354 107 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.138-201ENST00000363462 102 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 RNU6-407P-201ENST00000365280 104 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.445-201ENST00000384168 102 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 AL160004.2-201ENST00000432935 350 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 Y_RNA.639-201ENST00000458981 102 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 RNU6-966P-201ENST00000516479 104 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 RNA5SP481-201ENST00000516814 122 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 MIR4422-201ENST00000581938 83 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 AC211469.2-201ENST00000605461 205 ntBASIC1.53□□□□□ -2.16
NPHP3Q7Z494 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.53□□□□□ -2.16
NPHP3Q7Z494 ICE2P2-201ENST00000483823 2787 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 Y_RNA.124-201ENST00000363339 93 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 RNU6-271P-201ENST00000363858 105 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 Y_RNA.460-201ENST00000384255 102 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 RNU6-1105P-201ENST00000384774 107 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 MTCO3P19-201ENST00000415864 321 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 MCFD2P1-201ENST00000417812 300 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 PMCHL1-202ENST00000423102 261 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 FTH1P12-201ENST00000432137 551 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 AC069257.2-201ENST00000441819 155 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 MTND4P19-201ENST00000446659 478 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 MRPS10P1-201ENST00000448483 130 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 RPS27P1-201ENST00000450552 247 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 RN7SKP295-201ENST00000517264 153 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 AC024995.1-201ENST00000523014 93 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 SNORA77B-201ENST00000578179 125 ntBASIC1.52□□□□□ -2.17
NPHP3Q7Z494 SNORA72.2-201ENST00000365028 127 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 RNU6-1310P-201ENST00000384153 107 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 MIR515-2-201ENST00000384883 83 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 MIR515-1-201ENST00000384884 83 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 MRPL35P1-201ENST00000404272 572 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 AC010154.1-201ENST00000425857 269 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 AC015922.2-201ENST00000435593 184 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.51□□□□□ -2.17
NPHP3Q7Z494 RN7SL793P-201ENST00000583259 296 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 AC022217.4-201ENST00000604389 163 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 AC095038.3-201ENST00000634439 195 ntBASIC1.51□□□□□ -2.17
NPHP3Q7Z494 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
NPHP3Q7Z494 SNORA27.1-201ENST00000362604 124 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 Y_RNA.458-201ENST00000384240 102 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 RNU1-78P-201ENST00000391248 165 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 RPS26P45-201ENST00000471748 340 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 RNA5SP20-201ENST00000515976 84 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 RNU7-99P-201ENST00000516271 62 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 SNORA40.14-201ENST00000516543 86 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 RNU2-12P-201ENST00000517216 168 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 AC090821.2-201ENST00000523552 176 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.5□□□□□ -2.17
NPHP3Q7Z494 AC005176.2-201ENST00000596933 147 ntBASIC1.5□□□□□ -2.17
NPHP3Q7Z494 Y_RNA.243-201ENST00000364481 109 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 RNU1-133P-201ENST00000364867 167 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 RNU6-1199P-201ENST00000411249 104 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.49□□□□□ -2.17
NPHP3Q7Z494 AC097462.1-201ENST00000514125 324 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 RNU7-172P-201ENST00000517125 64 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 RPS29P30-201ENST00000600975 111 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 AC005828.6-201ENST00000606610 232 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 AL021879.1-201ENST00000611756 288 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
NPHP3Q7Z494 AC006435.5-201ENST00000624486 112 ntBASIC1.49□□□□□ -2.17
NPHP3Q7Z494 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
NPHP3Q7Z494 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms