Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MTND1P26-201ENST00000440488 538 ntBASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 AC046134.1-201ENST00000514454 666 ntBASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 SNORA18.7-201ENST00000516910 131 ntBASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 snoU2-30.1-201ENST00000365012 70 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC073464.1-201ENST00000429823 534 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 Z82188.1-201ENST00000436709 154 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC114811.1-201ENST00000507207 168 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-848P-201ENST00000515948 107 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-617P-201ENST00000516147 107 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-473P-201ENST00000516164 107 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-1332P-201ENST00000516666 104 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.714-201ENST00000517065 90 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC100830.2-201ENST00000581636 240 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC092747.3-201ENST00000603769 301 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AL357078.3-201ENST00000607528 618 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 SRP54-214ENST00000630962 162 ntTSL 5 BASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 MIR1295B-201ENST00000636144 60 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 MIRLET7D-201ENST00000362263 87 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 SNORD118-201ENST00000363593 134 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-454P-201ENST00000364292 107 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-364P-201ENST00000384387 107 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 SNORA8.3-201ENST00000384679 139 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-1158P-201ENST00000391167 107 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC073261.1-201ENST00000429409 121 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 CCDC34P1-201ENST00000507441 517 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 MIR5583-1-201ENST00000580941 59 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 MIR548AB-201ENST00000584917 84 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC073648.5-201ENST00000603502 305 ntBASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC-0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNY1P16-201ENST00000363063 111 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 MIR487A-201ENST00000385009 80 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 MRPS10P1-201ENST00000448483 130 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-759P-201ENST00000516740 103 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 RNU1-117P-201ENST00000517041 158 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 IGLVI-20-201ENST00000519296 130 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 AC022616.4-201ENST00000522985 181 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 AC040904.1-201ENST00000590850 223 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 AC108676.2-201ENST00000605225 163 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 AC092807.2-201ENST00000609367 243 ntBASIC-0.04□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 RNU5A-6P-201ENST00000384136 116 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 PCMTD1P1-201ENST00000455560 355 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 MTND3P7-201ENST00000474435 343 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 MTCO1P29-201ENST00000496868 288 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 AC090897.1-201ENST00000580909 226 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 POLR3GP2-201ENST00000588366 668 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 AL354950.2-201ENST00000617939 290 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 AL354751.2-201ENST00000415471 210 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.683-201ENST00000516508 93 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 MIR4528-201ENST00000577763 90 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 MIR4431-201ENST00000579990 94 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 MIR4743-201ENST00000584576 69 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 AC104408.1-201ENST00000605241 170 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 AL008636.1-201ENST00000625038 1018 ntBASIC-0.05□□□□□ -2.42
CCDC88AQ3V6T2 RNA5SP48-201ENST00000363969 126 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.243-201ENST00000364481 109 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-302P-201ENST00000365249 107 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 SNORA40.8-201ENST00000411034 126 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 MTND1P27-201ENST00000451117 902 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 SUMO1P2-201ENST00000452524 304 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 MTND2P38-201ENST00000522536 667 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 MIR4645-201ENST00000583158 77 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 uc_338.16-201ENST00000621804 95 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 U6.115-201ENST00000636045 103 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 AC068137.3-201ENST00000639191 341 ntBASIC-0.06□□□□□ -2.42
CCDC88AQ3V6T2 MIR377-201ENST00000362145 69 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 SNORD50.1-201ENST00000362987 71 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-254P-201ENST00000363377 107 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.169-201ENST00000363745 96 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 SNORA20B-201ENST00000384220 132 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-297P-201ENST00000384636 107 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 MIR15B-201ENST00000385045 98 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 RNA5SP475-201ENST00000410568 110 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 SNORD5.1-201ENST00000458800 75 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 MIR6079-201ENST00000635807 62 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.358-201ENST00000365491 99 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 MTND3P21-201ENST00000433774 331 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 UQCRBP2-201ENST00000447827 297 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 U8.19-201ENST00000459095 133 ntBASIC-0.07□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 204 ms