Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXA4Q00056 AL353689.1-201ENST00000438895 199 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXA4Q00056 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXA4Q00056 RNA5SP282-201ENST00000516355 108 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 RNA5SP148-201ENST00000516527 94 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 RNU6-826P-201ENST00000516827 104 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 AC011604.1-201ENST00000545978 196 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.15□□□□□ -2.07
HOXA4Q00056 AC132825.6-201ENST00000638861 357 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 AC245060.5-201ENST00000610778 3293 ntBASIC2.15□□□□□ -2.07
HOXA4Q00056 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
HOXA4Q00056 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
HOXA4Q00056 RNU6-704P-201ENST00000364162 103 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 SNORD56.5-201ENST00000364281 72 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 RNU4-41P-201ENST00000364426 143 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 SNORD116-18-201ENST00000383961 92 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 RNU1-148P-201ENST00000384472 162 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 Y_RNA.580-201ENST00000391004 95 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 RNU6-1228P-201ENST00000391014 107 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 AL121914.1-201ENST00000450188 156 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 ATP5J2P3-201ENST00000451550 258 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 RN7SL499P-201ENST00000481141 276 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 RPS29P21-201ENST00000496272 170 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 YWHAEP4-201ENST00000505390 198 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 RNU7-99P-201ENST00000516271 62 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXA4Q00056 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXA4Q00056 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.14□□□□□ -2.07
HOXA4Q00056 MIR3169-201ENST00000578032 83 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 MIR4431-201ENST00000579990 94 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 AC007229.1-201ENST00000590455 412 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 AL391903.3-201ENST00000612158 163 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 MIR6817-201ENST00000615588 66 ntBASIC2.14□□□□□ -2.07
HOXA4Q00056 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXA4Q00056 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXA4Q00056 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXA4Q00056 RNU6-862P-201ENST00000362804 105 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 RNA5SP68-201ENST00000363885 119 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 Y_RNA.203-201ENST00000364106 102 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 SNORD114-30-201ENST00000364448 72 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 RNU1-91P-201ENST00000364746 163 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 U8.9-201ENST00000365667 134 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 Y_RNA.587-201ENST00000391210 103 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 SNORA26.7-201ENST00000391288 122 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 RN7SKP284-201ENST00000411002 343 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 AC245102.2-201ENST00000448956 180 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 RNU6-1096P-201ENST00000517089 102 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.13□□□□□ -2.07
HOXA4Q00056 MIR4658-201ENST00000584344 65 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 AL353149.1-201ENST00000610667 244 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 AL359075.3-201ENST00000613288 217 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 SCARNA15.3-201ENST00000626315 122 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 SCARNA4.1-201ENST00000628597 123 ntBASIC2.13□□□□□ -2.07
HOXA4Q00056 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.13□□□□□ -2.07
HOXA4Q00056 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.13□□□□□ -2.07
HOXA4Q00056 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXA4Q00056 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXA4Q00056 Y_RNA.291-201ENST00000364886 113 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 RNU6-449P-201ENST00000383914 107 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 RNU6-1080P-201ENST00000383982 107 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 RNU6-239P-201ENST00000390990 99 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 Y_RNA.622-201ENST00000411091 108 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 AC099677.2-201ENST00000436385 175 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXA4Q00056 SNRPGP8-201ENST00000454064 226 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 AC233266.1-201ENST00000454518 96 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 SNORA59A-201ENST00000459326 152 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 UBE2DNL-203ENST00000474922 222 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 RN7SL636P-201ENST00000497504 294 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 AC005840.1-201ENST00000498412 377 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 AC096725.1-201ENST00000514266 313 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 RNU7-121P-201ENST00000516604 62 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 AC091178.2-201ENST00000584401 117 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 RPL12P50-201ENST00000603116 116 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 AC242852.1-201ENST00000612151 96 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXA4Q00056 AC244015.1-201ENST00000622301 99 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 MIR3658-201ENST00000636291 56 ntBASIC2.12□□□□□ -2.07
HOXA4Q00056 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXA4Q00056 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
HOXA4Q00056 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXA4Q00056 RNY1P11-201ENST00000363759 113 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 MIR15B-201ENST00000385045 98 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 MIR634-201ENST00000385208 97 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 RNA5SP496-201ENST00000391240 109 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 RN7SKP101-201ENST00000411376 320 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 RPS15AP28-201ENST00000435088 386 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXA4Q00056 TMSB4XP3-201ENST00000445144 114 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 SNORD116-25-201ENST00000516517 92 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 RNU6-1291P-201ENST00000516591 104 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 RNU1-142P-201ENST00000516682 145 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 RPL23AP91-201ENST00000569211 455 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 AC026271.5-201ENST00000577873 130 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 AL031274.2-201ENST00000599419 203 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 AL049861.1-201ENST00000603130 150 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 AC022513.1-201ENST00000624512 117 ntBASIC2.11□□□□□ -2.07
HOXA4Q00056 MIR6079-201ENST00000635807 62 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms