Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC003982.1-202ENST00000469928 248 ntBASIC3.26□□□□□ -1.89
LIG1P18858 RN7SL297P-201ENST00000483161 293 ntBASIC3.26□□□□□ -1.89
LIG1P18858 PDCD5P2-201ENST00000507570 312 ntBASIC3.26□□□□□ -1.89
LIG1P18858 AC097462.1-201ENST00000514125 324 ntBASIC3.26□□□□□ -1.89
LIG1P18858 SCARNA3-201ENST00000517097 143 ntBASIC3.26□□□□□ -1.89
LIG1P18858 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.26□□□□□ -1.89
LIG1P18858 MIR4658-201ENST00000584344 65 ntBASIC3.26□□□□□ -1.89
LIG1P18858 RPL12P50-201ENST00000603116 116 ntBASIC3.26□□□□□ -1.89
LIG1P18858 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
LIG1P18858 MIR3914-2-201ENST00000637339 95 ntBASIC3.26□□□□□ -1.89
LIG1P18858 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.26□□□□□ -1.89
LIG1P18858 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LIG1P18858 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.25□□□□□ -1.89
LIG1P18858 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
LIG1P18858 RNA5SP393-201ENST00000363423 117 ntBASIC3.25□□□□□ -1.89
LIG1P18858 RNU6-1336P-201ENST00000383886 109 ntBASIC3.25□□□□□ -1.89
LIG1P18858 RNU6-1328P-201ENST00000410938 106 ntBASIC3.25□□□□□ -1.89
LIG1P18858 MTCO1P44-201ENST00000441935 243 ntBASIC3.25□□□□□ -1.89
LIG1P18858 AL357134.1-201ENST00000445848 426 ntBASIC3.25□□□□□ -1.89
LIG1P18858 RPS4XP11-201ENST00000446897 772 ntBASIC3.25□□□□□ -1.89
LIG1P18858 AC023449.1-201ENST00000454464 154 ntBASIC3.25□□□□□ -1.89
LIG1P18858 SNORD11-201ENST00000459124 84 ntBASIC3.25□□□□□ -1.89
LIG1P18858 MIR3121-201ENST00000579680 77 ntBASIC3.25□□□□□ -1.89
LIG1P18858 AC131055.1-201ENST00000584626 316 ntBASIC3.25□□□□□ -1.89
LIG1P18858 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.25□□□□□ -1.89
LIG1P18858 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.25□□□□□ -1.89
LIG1P18858 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LIG1P18858 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
LIG1P18858 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
LIG1P18858 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.25□□□□□ -1.89
LIG1P18858 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LIG1P18858 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LIG1P18858 RNU6-235P-201ENST00000362644 107 ntBASIC3.24□□□□□ -1.89
LIG1P18858 U8.1-201ENST00000362843 134 ntBASIC3.24□□□□□ -1.89
LIG1P18858 Y_RNA.634-201ENST00000364811 113 ntBASIC3.24□□□□□ -1.89
LIG1P18858 RNU6-546P-201ENST00000383991 107 ntBASIC3.24□□□□□ -1.89
LIG1P18858 RNU6-136P-201ENST00000384663 107 ntBASIC3.24□□□□□ -1.89
LIG1P18858 SNORA26-201ENST00000391286 122 ntBASIC3.24□□□□□ -1.89
LIG1P18858 AL158147.1-201ENST00000443970 75 ntBASIC3.24□□□□□ -1.89
LIG1P18858 AC080013.2-201ENST00000460866 323 ntBASIC3.24□□□□□ -1.89
LIG1P18858 RNU6-126P-201ENST00000516685 103 ntBASIC3.24□□□□□ -1.89
LIG1P18858 RNU7-172P-201ENST00000517125 64 ntBASIC3.24□□□□□ -1.89
LIG1P18858 RNA5SP490-201ENST00000517141 136 ntBASIC3.24□□□□□ -1.89
LIG1P18858 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.24□□□□□ -1.89
LIG1P18858 RPL23AP91-201ENST00000569211 455 ntBASIC3.24□□□□□ -1.89
LIG1P18858 MIR4438-201ENST00000585271 93 ntBASIC3.24□□□□□ -1.89
LIG1P18858 AL449363.1-201ENST00000617815 186 ntBASIC3.24□□□□□ -1.89
LIG1P18858 AC080128.1-201ENST00000474389 1917 ntBASIC3.24□□□□□ -1.89
LIG1P18858 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
LIG1P18858 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LIG1P18858 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.24□□□□□ -1.89
LIG1P18858 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
LIG1P18858 Y_RNA.796-201ENST00000364268 102 ntBASIC3.23□□□□□ -1.89
LIG1P18858 Y_RNA.799-201ENST00000364992 102 ntBASIC3.23□□□□□ -1.89
LIG1P18858 MIR95-201ENST00000385072 81 ntBASIC3.23□□□□□ -1.89
LIG1P18858 RNU2-70P-201ENST00000410718 179 ntBASIC3.23□□□□□ -1.89
LIG1P18858 AP001486.1-201ENST00000463339 476 ntBASIC3.23□□□□□ -1.89
LIG1P18858 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.23□□□□□ -1.89
LIG1P18858 RNU6-772P-201ENST00000516042 105 ntBASIC3.23□□□□□ -1.89
LIG1P18858 RNU6-965P-201ENST00000516721 96 ntBASIC3.23□□□□□ -1.89
LIG1P18858 Y_RNA.709-201ENST00000516952 92 ntBASIC3.23□□□□□ -1.89
LIG1P18858 MIR6129-201ENST00000616087 109 ntBASIC3.23□□□□□ -1.89
LIG1P18858 U6.95-201ENST00000636931 70 ntBASIC3.23□□□□□ -1.89
LIG1P18858 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
LIG1P18858 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.22□□□□□ -1.89
LIG1P18858 AL391516.1-201ENST00000554380 2449 ntBASIC3.22□□□□□ -1.89
LIG1P18858 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
LIG1P18858 RNU6-1138P-201ENST00000365359 106 ntBASIC3.22□□□□□ -1.89
LIG1P18858 MIR562-201ENST00000384894 95 ntBASIC3.22□□□□□ -1.89
LIG1P18858 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.22□□□□□ -1.89
LIG1P18858 AC023141.11-201ENST00000508864 202 ntBASIC3.22□□□□□ -1.89
LIG1P18858 AC011604.1-201ENST00000545978 196 ntBASIC3.22□□□□□ -1.89
LIG1P18858 EIF4BP1-201ENST00000554881 351 ntBASIC3.22□□□□□ -1.89
LIG1P18858 AC105245.1-201ENST00000581934 244 ntBASIC3.22□□□□□ -1.89
LIG1P18858 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.22□□□□□ -1.89
LIG1P18858 MIR5739-201ENST00000619803 80 ntBASIC3.22□□□□□ -1.89
LIG1P18858 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.21□□□□□ -1.9
LIG1P18858 Y_RNA.91-201ENST00000363042 107 ntBASIC3.21□□□□□ -1.9
LIG1P18858 Y_RNA.111-201ENST00000363248 100 ntBASIC3.21□□□□□ -1.9
LIG1P18858 RNU6-1209P-201ENST00000363655 107 ntBASIC3.21□□□□□ -1.9
LIG1P18858 SNORA9.2-201ENST00000365361 133 ntBASIC3.21□□□□□ -1.9
LIG1P18858 SNORA40.5-201ENST00000391061 128 ntBASIC3.21□□□□□ -1.9
LIG1P18858 RNU2-32P-201ENST00000411193 191 ntBASIC3.21□□□□□ -1.9
LIG1P18858 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.21□□□□□ -1.9
LIG1P18858 AC093259.1-201ENST00000509755 300 ntBASIC3.21□□□□□ -1.9
LIG1P18858 AC091826.1-201ENST00000514065 313 ntBASIC3.21□□□□□ -1.9
LIG1P18858 AC107016.2-201ENST00000547968 190 ntBASIC3.21□□□□□ -1.9
LIG1P18858 MIR4662B-201ENST00000579498 81 ntBASIC3.21□□□□□ -1.9
LIG1P18858 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.21□□□□□ -1.9
LIG1P18858 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
LIG1P18858 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.2□□□□□ -1.9
LIG1P18858 AC131280.1-202ENST00000624067 4211 ntBASIC3.2□□□□□ -1.9
LIG1P18858 RNU6-755P-201ENST00000364400 103 ntBASIC3.2□□□□□ -1.9
LIG1P18858 Y_RNA.332-201ENST00000365271 113 ntBASIC3.2□□□□□ -1.9
LIG1P18858 AL603914.1-201ENST00000401964 204 ntBASIC3.2□□□□□ -1.9
LIG1P18858 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.2□□□□□ -1.9
LIG1P18858 AC123900.1-201ENST00000420390 96 ntBASIC3.2□□□□□ -1.9
LIG1P18858 RNU6-589P-201ENST00000516485 107 ntBASIC3.2□□□□□ -1.9
LIG1P18858 SNORA31.15-201ENST00000516771 132 ntBASIC3.2□□□□□ -1.9
LIG1P18858 RNU1-104P-201ENST00000517280 175 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms