Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.74□□□□□ -2.13
HMGB1P09429 AC245047.7-201ENST00000440265 293 ntBASIC1.74□□□□□ -2.13
HMGB1P09429 AC114811.1-201ENST00000507207 168 ntBASIC1.74□□□□□ -2.13
HMGB1P09429 Y_RNA.661-201ENST00000516003 99 ntBASIC1.74□□□□□ -2.13
HMGB1P09429 AL591926.4-201ENST00000616895 298 ntBASIC1.74□□□□□ -2.13
HMGB1P09429 RNU6-833P-201ENST00000363486 107 ntBASIC1.73□□□□□ -2.13
HMGB1P09429 Y_RNA.172-201ENST00000363765 102 ntBASIC1.73□□□□□ -2.13
HMGB1P09429 Y_RNA.632-201ENST00000459189 102 ntBASIC1.73□□□□□ -2.13
HMGB1P09429 OR2A41P-201ENST00000473586 105 ntBASIC1.73□□□□□ -2.13
HMGB1P09429 RNU6-436P-201ENST00000516171 114 ntBASIC1.73□□□□□ -2.13
HMGB1P09429 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.73□□□□□ -2.13
HMGB1P09429 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.73□□□□□ -2.13
HMGB1P09429 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HMGB1P09429 MIR526A1-201ENST00000384897 85 ntBASIC1.72□□□□□ -2.13
HMGB1P09429 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.72□□□□□ -2.13
HMGB1P09429 RNU2-61P-201ENST00000411069 191 ntBASIC1.72□□□□□ -2.13
HMGB1P09429 RNU6-1199P-201ENST00000411249 104 ntBASIC1.72□□□□□ -2.13
HMGB1P09429 RNU6-1054P-201ENST00000411293 104 ntBASIC1.72□□□□□ -2.13
HMGB1P09429 AC091951.2-201ENST00000500762 203 ntBASIC1.72□□□□□ -2.13
HMGB1P09429 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
HMGB1P09429 U8.1-201ENST00000362843 134 ntBASIC1.71□□□□□ -2.14
HMGB1P09429 RNU1-42P-201ENST00000364033 160 ntBASIC1.71□□□□□ -2.14
HMGB1P09429 Y_RNA.356-201ENST00000365475 113 ntBASIC1.71□□□□□ -2.14
HMGB1P09429 Y_RNA.463-201ENST00000384271 102 ntBASIC1.71□□□□□ -2.14
HMGB1P09429 AL354695.1-201ENST00000427935 228 ntBASIC1.71□□□□□ -2.14
HMGB1P09429 AL591806.2-201ENST00000433122 173 ntBASIC1.71□□□□□ -2.14
HMGB1P09429 RNU6-966P-201ENST00000516479 104 ntBASIC1.71□□□□□ -2.14
HMGB1P09429 AC027279.3-201ENST00000625055 122 ntBASIC1.71□□□□□ -2.14
HMGB1P09429 Y_RNA.230-201ENST00000364348 109 ntBASIC1.7□□□□□ -2.14
HMGB1P09429 RNU6-1175P-201ENST00000365200 107 ntBASIC1.7□□□□□ -2.14
HMGB1P09429 Y_RNA.329-201ENST00000365209 107 ntBASIC1.7□□□□□ -2.14
HMGB1P09429 SNORA70.7-201ENST00000384159 133 ntBASIC1.7□□□□□ -2.14
HMGB1P09429 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.7□□□□□ -2.14
HMGB1P09429 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.7□□□□□ -2.14
HMGB1P09429 AC004832.4-201ENST00000608952 331 ntBASIC1.7□□□□□ -2.14
HMGB1P09429 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.69□□□□□ -2.14
HMGB1P09429 Y_RNA.146-201ENST00000363549 102 ntBASIC1.69□□□□□ -2.14
HMGB1P09429 Y_RNA.187-201ENST00000363918 113 ntBASIC1.69□□□□□ -2.14
HMGB1P09429 SNORD111.1-201ENST00000516421 86 ntBASIC1.69□□□□□ -2.14
HMGB1P09429 RN7SKP295-201ENST00000517264 153 ntBASIC1.69□□□□□ -2.14
HMGB1P09429 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.69□□□□□ -2.14
HMGB1P09429 AC005972.2-201ENST00000604690 348 ntBASIC1.69□□□□□ -2.14
HMGB1P09429 AC022441.3-201ENST00000605737 136 ntBASIC1.69□□□□□ -2.14
HMGB1P09429 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HMGB1P09429 RNU6-1084P-201ENST00000362498 107 ntBASIC1.68□□□□□ -2.14
HMGB1P09429 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.68□□□□□ -2.14
HMGB1P09429 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.68□□□□□ -2.14
HMGB1P09429 SNRPGP13-201ENST00000442212 177 ntBASIC1.68□□□□□ -2.14
HMGB1P09429 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.68□□□□□ -2.14
HMGB1P09429 RPS20P10-201ENST00000451209 253 ntBASIC1.68□□□□□ -2.14
HMGB1P09429 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.68□□□□□ -2.14
HMGB1P09429 SNORD116-28-201ENST00000516123 91 ntBASIC1.68□□□□□ -2.14
HMGB1P09429 AC022616.4-201ENST00000522985 181 ntBASIC1.68□□□□□ -2.14
HMGB1P09429 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.68□□□□□ -2.14
HMGB1P09429 AL645939.4-201ENST00000604495 135 ntBASIC1.68□□□□□ -2.14
HMGB1P09429 MIR4272-201ENST00000635924 64 ntBASIC1.68□□□□□ -2.14
HMGB1P09429 RNU1-17P-201ENST00000363022 152 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 RNU1-124P-201ENST00000363861 145 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 MIR452-201ENST00000385020 85 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 RNU6-855P-201ENST00000410395 104 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 AC063976.4-201ENST00000421971 163 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 snoU13.23-201ENST00000458863 104 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 RNU6-875P-201ENST00000516488 106 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 AC092447.9-201ENST00000603395 144 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 AL008636.1-201ENST00000625038 1018 ntBASIC1.67□□□□□ -2.14
HMGB1P09429 Y_RNA.70-201ENST00000362886 110 ntBASIC1.66□□□□□ -2.14
HMGB1P09429 Y_RNA.303-201ENST00000364998 94 ntBASIC1.66□□□□□ -2.14
HMGB1P09429 SNORA11.2-201ENST00000408318 127 ntBASIC1.66□□□□□ -2.14
HMGB1P09429 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.66□□□□□ -2.14
HMGB1P09429 Y_RNA.253-201ENST00000364562 112 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 Y_RNA.529-201ENST00000384586 119 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 MIR516B2-201ENST00000385190 85 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 RNU6-1009P-201ENST00000390996 107 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 MIR1298-201ENST00000408783 112 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 MCFD2P1-201ENST00000417812 300 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.65□□□□□ -2.15
HMGB1P09429 AC005042.3-201ENST00000453230 174 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 SNORD19B-201ENST00000459623 84 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 SNORA25.10-201ENST00000515926 124 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 RPS29P30-201ENST00000600975 111 ntBASIC1.65□□□□□ -2.15
HMGB1P09429 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
HMGB1P09429 Y_RNA.39-201ENST00000362620 98 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 Y_RNA.336-201ENST00000365307 109 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 Y_RNA.363-201ENST00000365529 113 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 MIR764-201ENST00000390811 85 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 AC236972.2-201ENST00000434979 310 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.64□□□□□ -2.15
HMGB1P09429 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.64□□□□□ -2.15
HMGB1P09429 SNORD79.1-201ENST00000516069 84 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 RBM11P1-201ENST00000604951 799 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 Y_RNA.772-201ENST00000606692 102 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 AL096861.1-201ENST00000610899 123 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 AC104985.2-201ENST00000620598 500 ntBASIC1.64□□□□□ -2.15
HMGB1P09429 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
HMGB1P09429 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
HMGB1P09429 U8.5-201ENST00000364528 136 ntBASIC1.63□□□□□ -2.15
HMGB1P09429 Y_RNA.331-201ENST00000365267 102 ntBASIC1.63□□□□□ -2.15
HMGB1P09429 SNORA80D-201ENST00000384488 135 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms