Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.16□□□□□ -2.22
SDC3O75056 RNU7-152P-201ENST00000458982 64 ntBASIC1.16□□□□□ -2.22
SDC3O75056 RPS29P1-201ENST00000465274 159 ntBASIC1.16□□□□□ -2.22
SDC3O75056 RN7SKP179-201ENST00000516126 217 ntBASIC1.16□□□□□ -2.22
SDC3O75056 RNU7-40P-201ENST00000516397 64 ntBASIC1.16□□□□□ -2.22
SDC3O75056 Y_RNA.718-201ENST00000517110 102 ntBASIC1.16□□□□□ -2.22
SDC3O75056 AL358944.1-201ENST00000528537 144 ntBASIC1.16□□□□□ -2.22
SDC3O75056 AP002004.2-201ENST00000531656 154 ntBASIC1.16□□□□□ -2.22
SDC3O75056 MIR3664-201ENST00000579074 99 ntBASIC1.16□□□□□ -2.22
SDC3O75056 RBM11P1-201ENST00000604951 799 ntBASIC1.16□□□□□ -2.22
SDC3O75056 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.16□□□□□ -2.22
SDC3O75056 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.16□□□□□ -2.22
SDC3O75056 MTND4LP32-201ENST00000636111 270 ntBASIC1.16□□□□□ -2.22
SDC3O75056 Y_RNA.124-201ENST00000363339 93 ntBASIC1.15□□□□□ -2.23
SDC3O75056 SNORD115-30-201ENST00000364117 82 ntBASIC1.15□□□□□ -2.23
SDC3O75056 RNU1-93P-201ENST00000364704 169 ntBASIC1.15□□□□□ -2.23
SDC3O75056 Y_RNA.303-201ENST00000364998 94 ntBASIC1.15□□□□□ -2.23
SDC3O75056 RNU6-1040P-201ENST00000383974 107 ntBASIC1.15□□□□□ -2.23
SDC3O75056 RNU6-376P-201ENST00000384731 106 ntBASIC1.15□□□□□ -2.23
SDC3O75056 MIR520G-201ENST00000385064 90 ntBASIC1.15□□□□□ -2.23
SDC3O75056 STAG3L5P-204ENST00000443759 179 ntBASIC1.15□□□□□ -2.23
SDC3O75056 AC091951.2-201ENST00000500762 203 ntBASIC1.15□□□□□ -2.23
SDC3O75056 RNU6-1012P-201ENST00000516606 109 ntBASIC1.15□□□□□ -2.23
SDC3O75056 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.15□□□□□ -2.23
SDC3O75056 AC004467.1-201ENST00000615678 330 ntBASIC1.15□□□□□ -2.23
SDC3O75056 SNORD3E-202ENST00000627253 216 ntBASIC1.15□□□□□ -2.23
SDC3O75056 MIR1302-1-201ENST00000637932 143 ntBASIC1.15□□□□□ -2.23
SDC3O75056 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
SDC3O75056 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.14□□□□□ -2.23
SDC3O75056 RNU6-424P-201ENST00000384367 105 ntBASIC1.14□□□□□ -2.23
SDC3O75056 MIR618-201ENST00000385287 98 ntBASIC1.14□□□□□ -2.23
SDC3O75056 SNORD78.2-201ENST00000391076 69 ntBASIC1.14□□□□□ -2.23
SDC3O75056 Y_RNA.605-201ENST00000410577 105 ntBASIC1.14□□□□□ -2.23
SDC3O75056 HSPE1P13-201ENST00000451143 297 ntBASIC1.14□□□□□ -2.23
SDC3O75056 OR9P1P-201ENST00000496431 281 ntBASIC1.14□□□□□ -2.23
SDC3O75056 AL133373.1-201ENST00000497098 94 ntBASIC1.14□□□□□ -2.23
SDC3O75056 SNORA70.12-201ENST00000516084 153 ntBASIC1.14□□□□□ -2.23
SDC3O75056 RNU6-875P-201ENST00000516488 106 ntBASIC1.14□□□□□ -2.23
SDC3O75056 RNU2-56P-201ENST00000516826 190 ntBASIC1.14□□□□□ -2.23
SDC3O75056 MIR4295-201ENST00000585286 85 ntBASIC1.14□□□□□ -2.23
SDC3O75056 FAM106DP-201ENST00000586416 501 ntBASIC1.14□□□□□ -2.23
SDC3O75056 AC240442.1-201ENST00000616055 283 ntBASIC1.14□□□□□ -2.23
SDC3O75056 U2.1-201ENST00000618978 145 ntBASIC1.14□□□□□ -2.23
SDC3O75056 SNORA1B-201ENST00000362535 133 ntBASIC1.13□□□□□ -2.23
SDC3O75056 Y_RNA.265-201ENST00000364677 108 ntBASIC1.13□□□□□ -2.23
SDC3O75056 Y_RNA.314-201ENST00000365114 102 ntBASIC1.13□□□□□ -2.23
SDC3O75056 RNA5SP482-201ENST00000391269 118 ntBASIC1.13□□□□□ -2.23
SDC3O75056 RNU2-54P-201ENST00000410299 190 ntBASIC1.13□□□□□ -2.23
SDC3O75056 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.13□□□□□ -2.23
SDC3O75056 AC087343.1-201ENST00000477341 475 ntBASIC1.13□□□□□ -2.23
SDC3O75056 RNU6-699P-201ENST00000517081 110 ntBASIC1.13□□□□□ -2.23
SDC3O75056 AC090821.2-201ENST00000523552 176 ntBASIC1.13□□□□□ -2.23
SDC3O75056 AC023442.1-201ENST00000531247 422 ntBASIC1.13□□□□□ -2.23
SDC3O75056 AC055872.1-201ENST00000570978 278 ntBASIC1.13□□□□□ -2.23
SDC3O75056 MIR4801-201ENST00000582704 82 ntBASIC1.13□□□□□ -2.23
SDC3O75056 MIR6767-201ENST00000637302 66 ntBASIC1.13□□□□□ -2.23
SDC3O75056 AC068647.2-201ENST00000637380 353 ntBASIC1.13□□□□□ -2.23
SDC3O75056 Y_RNA.27-201ENST00000362540 103 ntBASIC1.12□□□□□ -2.23
SDC3O75056 Y_RNA.187-201ENST00000363918 113 ntBASIC1.12□□□□□ -2.23
SDC3O75056 RNU4-76P-201ENST00000364509 141 ntBASIC1.12□□□□□ -2.23
SDC3O75056 Y_RNA.263-201ENST00000364659 114 ntBASIC1.12□□□□□ -2.23
SDC3O75056 Y_RNA.267-201ENST00000364679 109 ntBASIC1.12□□□□□ -2.23
SDC3O75056 RNU6-1080P-201ENST00000383982 107 ntBASIC1.12□□□□□ -2.23
SDC3O75056 RNU6-505P-201ENST00000384427 107 ntBASIC1.12□□□□□ -2.23
SDC3O75056 MIR653-201ENST00000385279 96 ntBASIC1.12□□□□□ -2.23
SDC3O75056 MTCO2P27-201ENST00000420740 428 ntBASIC1.12□□□□□ -2.23
SDC3O75056 RNU7-169P-201ENST00000459456 61 ntBASIC1.12□□□□□ -2.23
SDC3O75056 AC092991.1-201ENST00000477176 376 ntBASIC1.12□□□□□ -2.23
SDC3O75056 RNA5SP168-201ENST00000516642 112 ntBASIC1.12□□□□□ -2.23
SDC3O75056 AL355375.2-201ENST00000574825 175 ntBASIC1.12□□□□□ -2.23
SDC3O75056 AC006380.1-201ENST00000603598 186 ntBASIC1.12□□□□□ -2.23
SDC3O75056 AL513534.2-201ENST00000603836 250 ntBASIC1.12□□□□□ -2.23
SDC3O75056 AC091925.1-201ENST00000623204 462 ntBASIC1.12□□□□□ -2.23
SDC3O75056 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.11□□□□□ -2.23
SDC3O75056 Y_RNA.101-201ENST00000363154 102 ntBASIC1.11□□□□□ -2.23
SDC3O75056 RNY3P11-201ENST00000364153 102 ntBASIC1.11□□□□□ -2.23
SDC3O75056 Y_RNA.230-201ENST00000364348 109 ntBASIC1.11□□□□□ -2.23
SDC3O75056 RNU6-926P-201ENST00000384075 107 ntBASIC1.11□□□□□ -2.23
SDC3O75056 Y_RNA.463-201ENST00000384271 102 ntBASIC1.11□□□□□ -2.23
SDC3O75056 U8.16-201ENST00000391279 133 ntBASIC1.11□□□□□ -2.23
SDC3O75056 CALM2P4-201ENST00000430810 426 ntBASIC1.11□□□□□ -2.23
SDC3O75056 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.11□□□□□ -2.23
SDC3O75056 AC093019.1-201ENST00000443135 252 ntBASIC1.11□□□□□ -2.23
SDC3O75056 Y_RNA.632-201ENST00000459189 102 ntBASIC1.11□□□□□ -2.23
SDC3O75056 SNORD19B-201ENST00000459623 84 ntBASIC1.11□□□□□ -2.23
SDC3O75056 RNU6-1096P-201ENST00000517089 102 ntBASIC1.11□□□□□ -2.23
SDC3O75056 VN1R91P-201ENST00000594377 169 ntBASIC1.11□□□□□ -2.23
SDC3O75056 AC005176.2-201ENST00000596933 147 ntBASIC1.11□□□□□ -2.23
SDC3O75056 AL050343.2-201ENST00000607338 280 ntBASIC1.11□□□□□ -2.23
SDC3O75056 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.1□□□□□ -2.23
SDC3O75056 RNU6-199P-201ENST00000362954 107 ntBASIC1.1□□□□□ -2.23
SDC3O75056 RNU6-20P-201ENST00000384106 107 ntBASIC1.1□□□□□ -2.23
SDC3O75056 MIR628-201ENST00000385229 95 ntBASIC1.1□□□□□ -2.23
SDC3O75056 RNU6-1009P-201ENST00000390996 107 ntBASIC1.1□□□□□ -2.23
SDC3O75056 AL031003.1-201ENST00000404229 172 ntBASIC1.1□□□□□ -2.23
SDC3O75056 RNU6-1199P-201ENST00000411249 104 ntBASIC1.1□□□□□ -2.23
SDC3O75056 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.1□□□□□ -2.23
SDC3O75056 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.1□□□□□ -2.23
SDC3O75056 AL162725.1-201ENST00000435405 301 ntBASIC1.1□□□□□ -2.23
SDC3O75056 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms