Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNA5SP240-201ENST00000365355 128 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 Y_RNA.572-201ENST00000384757 98 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNU6-855P-201ENST00000410395 104 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNU6-710P-201ENST00000410424 105 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNA5SP338-201ENST00000410495 85 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 AL603825.1-201ENST00000438481 80 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 AC104332.1-201ENST00000440471 797 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 HSPE1P13-201ENST00000451143 297 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RPS20P10-201ENST00000451209 253 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 SUMO1P2-201ENST00000452524 304 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 AL137159.1-201ENST00000452808 512 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNU7-141P-201ENST00000459304 62 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 AC114982.1-201ENST00000469402 321 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.88□□□□□ -2.11
LMX1BO60663 RNU6-1219P-201ENST00000516143 112 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNA5SP458-201ENST00000516188 119 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNU6-1337P-201ENST00000516525 95 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNU6-1212P-201ENST00000517023 104 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNU6-667P-201ENST00000517186 102 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 AL355297.2-201ENST00000604792 129 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.15-201ENST00000611544 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.16-201ENST00000613119 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.12-201ENST00000613778 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.20-201ENST00000613956 192 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.9-201ENST00000615427 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.11-201ENST00000616345 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.2-201ENST00000616535 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.3-201ENST00000617785 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.19-201ENST00000618602 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 RNU2-1-201ENST00000618664 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.6-201ENST00000619225 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.5-201ENST00000619465 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 U2.10-201ENST00000620268 191 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 AP000553.5-201ENST00000641933 54 ntBASIC1.88□□□□□ -2.11
LMX1BO60663 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.88□□□□□ -2.11
LMX1BO60663 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMX1BO60663 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
LMX1BO60663 snoU2_19.4-201ENST00000364329 80 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 Y_RNA.240-201ENST00000364469 95 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 U8.7-201ENST00000364940 136 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 SNORA25B-201ENST00000365507 128 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 RNU6-438P-201ENST00000365561 103 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 Y_RNA.464-201ENST00000384282 110 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 MIR561-201ENST00000385216 97 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 MTCO2P33-201ENST00000402100 465 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 AL355497.1-201ENST00000406262 551 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 AL357139.1-201ENST00000407792 426 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 SNORA11.4-201ENST00000408823 129 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 AC060773.1-201ENST00000421698 310 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 AL357134.1-201ENST00000445848 426 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 RPS26P55-201ENST00000471178 356 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.87□□□□□ -2.11
LMX1BO60663 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.87□□□□□ -2.11
LMX1BO60663 Y_RNA.676-201ENST00000516393 96 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 AP005660.1-201ENST00000522972 293 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 AC004832.4-201ENST00000608952 331 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 U6.106-201ENST00000636360 105 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 MIR219B-201ENST00000637023 88 ntBASIC1.87□□□□□ -2.11
LMX1BO60663 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
LMX1BO60663 AL356292.1-201ENST00000283110 373 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 SNORD114-6-201ENST00000364393 72 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 Y_RNA.287-201ENST00000364853 94 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 SNORA6-201ENST00000384033 151 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 RNU1-52P-201ENST00000384190 164 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 RNU6-381P-201ENST00000391259 108 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 MIR1262-201ENST00000408276 93 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 RNU2-63P-201ENST00000410792 194 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.86□□□□□ -2.11
LMX1BO60663 MTND2P29-201ENST00000438595 412 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1BO60663 RNU6-717P-201ENST00000459076 104 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 RNA5SP20-201ENST00000515976 84 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 SNORA70.12-201ENST00000516084 153 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 RNU2-34P-201ENST00000516534 121 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 RNU6-63P-201ENST00000516690 95 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 RNU6-856P-201ENST00000516959 98 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 MRPS18CP4-201ENST00000535821 231 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 MIR5694-201ENST00000581190 76 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 AL449363.1-201ENST00000617815 186 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.86□□□□□ -2.11
LMX1BO60663 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1BO60663 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1BO60663 SNORA38-201ENST00000363946 132 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 RNU6-1240P-201ENST00000365155 104 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 SNORA64-201ENST00000384674 134 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 RNU6-1072P-201ENST00000384703 107 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 RNU6-443P-201ENST00000384780 107 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 MIR626-201ENST00000385032 94 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 RNU5E-9P-201ENST00000411164 104 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.85□□□□□ -2.11
LMX1BO60663 AL021397.1-201ENST00000451806 248 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.85□□□□□ -2.11
LMX1BO60663 SCARNA8-201ENST00000515924 131 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 AC027419.1-201ENST00000522976 328 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 NDUFA5P6-201ENST00000542110 379 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 MIR6132-201ENST00000622083 109 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 AC006435.5-201ENST00000624486 112 ntBASIC1.85□□□□□ -2.11
LMX1BO60663 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LMX1BO60663 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms