Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC107393.1-201ENST00000512403 346 ntBASIC2.58□□□□□ -2
CBX4O00257 RNU6-1096P-201ENST00000517089 102 ntBASIC2.58□□□□□ -2
CBX4O00257 AC021269.2-201ENST00000532318 330 ntBASIC2.58□□□□□ -2
CBX4O00257 MIR4308-201ENST00000580634 81 ntBASIC2.58□□□□□ -2
CBX4O00257 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.58□□□□□ -2
CBX4O00257 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.58□□□□□ -2
CBX4O00257 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
CBX4O00257 Y_RNA.7-201ENST00000362352 102 ntBASIC2.57□□□□□ -2
CBX4O00257 Y_RNA.435-201ENST00000384095 112 ntBASIC2.57□□□□□ -2
CBX4O00257 Y_RNA.555-201ENST00000384673 110 ntBASIC2.57□□□□□ -2
CBX4O00257 MIR562-201ENST00000384894 95 ntBASIC2.57□□□□□ -2
CBX4O00257 MIR518A2-201ENST00000384966 87 ntBASIC2.57□□□□□ -2
CBX4O00257 MIR626-201ENST00000385032 94 ntBASIC2.57□□□□□ -2
CBX4O00257 RPS4XP11-201ENST00000446897 772 ntBASIC2.57□□□□□ -2
CBX4O00257 RNU6-437P-201ENST00000459408 95 ntBASIC2.57□□□□□ -2
CBX4O00257 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.57□□□□□ -2
CBX4O00257 AC004486.1-201ENST00000546846 233 ntBASIC2.57□□□□□ -2
CBX4O00257 SNORD14A-201ENST00000606526 91 ntBASIC2.57□□□□□ -2
CBX4O00257 U4.3-201ENST00000621047 82 ntBASIC2.57□□□□□ -2
CBX4O00257 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CBX4O00257 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.56□□□□□ -2
CBX4O00257 Y_RNA.24-201ENST00000362508 103 ntBASIC2.56□□□□□ -2
CBX4O00257 RNU4-10P-201ENST00000364383 140 ntBASIC2.56□□□□□ -2
CBX4O00257 Y_RNA.233-201ENST00000364407 101 ntBASIC2.56□□□□□ -2
CBX4O00257 RNU4-70P-201ENST00000384579 139 ntBASIC2.56□□□□□ -2
CBX4O00257 HMGN2P39-201ENST00000398005 273 ntBASIC2.56□□□□□ -2
CBX4O00257 RN7SKP164-201ENST00000516138 266 ntBASIC2.56□□□□□ -2
CBX4O00257 RNU7-128P-201ENST00000517247 62 ntBASIC2.56□□□□□ -2
CBX4O00257 AC011604.1-201ENST00000545978 196 ntBASIC2.56□□□□□ -2
CBX4O00257 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
CBX4O00257 AC018630.2-201ENST00000534866 2403 ntBASIC2.56□□□□□ -2
CBX4O00257 SNORA33-201ENST00000363664 130 ntBASIC2.55□□□□□ -2
CBX4O00257 RNU6-969P-201ENST00000383900 105 ntBASIC2.55□□□□□ -2
CBX4O00257 RNU1-52P-201ENST00000384190 164 ntBASIC2.55□□□□□ -2
CBX4O00257 Y_RNA.571-201ENST00000384753 98 ntBASIC2.55□□□□□ -2
CBX4O00257 MIR597-201ENST00000384968 97 ntBASIC2.55□□□□□ -2
CBX4O00257 Y_RNA.621-201ENST00000411065 96 ntBASIC2.55□□□□□ -2
CBX4O00257 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.55□□□□□ -2
CBX4O00257 snoU13.26-201ENST00000459452 105 ntBASIC2.55□□□□□ -2
CBX4O00257 RPS26P45-201ENST00000471748 340 ntBASIC2.55□□□□□ -2
CBX4O00257 AC068700.1-201ENST00000565862 3754 ntBASIC2.55□□□□□ -2
CBX4O00257 MIR3670-2-201ENST00000582974 65 ntBASIC2.55□□□□□ -2
CBX4O00257 MIR5092-201ENST00000583139 88 ntBASIC2.55□□□□□ -2
CBX4O00257 MIR3670-1-201ENST00000584160 65 ntBASIC2.55□□□□□ -2
CBX4O00257 MIR3670-3-201ENST00000584855 65 ntBASIC2.55□□□□□ -2
CBX4O00257 AC069114.2-201ENST00000604699 304 ntBASIC2.55□□□□□ -2
CBX4O00257 MIR3670-4-201ENST00000612260 65 ntBASIC2.55□□□□□ -2
CBX4O00257 MIR6079-201ENST00000635807 62 ntBASIC2.55□□□□□ -2
CBX4O00257 ZNF658B-202ENST00000615961 3375 ntBASIC2.55□□□□□ -2
CBX4O00257 Z82195.2-201ENST00000612348 18351 ntBASIC2.54□□□□□ -2
CBX4O00257 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.54□□□□□ -2
CBX4O00257 Y_RNA.121-201ENST00000363309 113 ntBASIC2.54□□□□□ -2
CBX4O00257 RNU6-103P-201ENST00000363686 107 ntBASIC2.54□□□□□ -2
CBX4O00257 RNU6-674P-201ENST00000363831 107 ntBASIC2.54□□□□□ -2
CBX4O00257 Y_RNA.238-201ENST00000364441 102 ntBASIC2.54□□□□□ -2
CBX4O00257 RNU6-381P-201ENST00000391259 108 ntBASIC2.54□□□□□ -2
CBX4O00257 MIR548I3-201ENST00000408378 149 ntBASIC2.54□□□□□ -2
CBX4O00257 MIR548I1-201ENST00000408810 149 ntBASIC2.54□□□□□ -2
CBX4O00257 Z98742.3-201ENST00000418637 326 ntBASIC2.54□□□□□ -2
CBX4O00257 AC099677.2-201ENST00000436385 175 ntBASIC2.54□□□□□ -2
CBX4O00257 AC091021.1-201ENST00000468051 388 ntBASIC2.54□□□□□ -2
CBX4O00257 AL163195.1-201ENST00000496941 348 ntBASIC2.54□□□□□ -2
CBX4O00257 RNU6-861P-201ENST00000516745 106 ntBASIC2.54□□□□□ -2
CBX4O00257 AC022559.1-201ENST00000520905 205 ntBASIC2.54□□□□□ -2
CBX4O00257 MIR2681-201ENST00000581814 105 ntBASIC2.54□□□□□ -2
CBX4O00257 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.54□□□□□ -2
CBX4O00257 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.54□□□□□ -2
CBX4O00257 U6.108-201ENST00000637764 58 ntBASIC2.54□□□□□ -2
CBX4O00257 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CBX4O00257 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.54□□□□□ -2
CBX4O00257 ZNF271P-202ENST00000465539 1970 ntBASIC2.54□□□□□ -2
CBX4O00257 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
CBX4O00257 Y_RNA.150-201ENST00000363562 102 ntBASIC2.53□□□□□ -2
CBX4O00257 AL512604.1-201ENST00000404812 257 ntBASIC2.53□□□□□ -2
CBX4O00257 MIR1283-2-201ENST00000408621 87 ntBASIC2.53□□□□□ -2
CBX4O00257 RNU2-2P-201ENST00000410396 191 ntBASIC2.53□□□□□ -2
CBX4O00257 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.53□□□□□ -2
CBX4O00257 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.53□□□□□ -2
CBX4O00257 AC233266.1-201ENST00000454518 96 ntBASIC2.53□□□□□ -2
CBX4O00257 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.53□□□□□ -2
CBX4O00257 RNU6-341P-201ENST00000516973 96 ntBASIC2.53□□□□□ -2
CBX4O00257 RNU2-4P-201ENST00000606190 192 ntBASIC2.53□□□□□ -2
CBX4O00257 AC242852.1-201ENST00000612151 96 ntBASIC2.53□□□□□ -2
CBX4O00257 AC244015.1-201ENST00000622301 99 ntBASIC2.53□□□□□ -2
CBX4O00257 AC022513.1-201ENST00000624512 117 ntBASIC2.53□□□□□ -2
CBX4O00257 AC100821.1-201ENST00000523153 2479 ntBASIC2.53□□□□□ -2
CBX4O00257 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
CBX4O00257 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
CBX4O00257 SNORA25.6-201ENST00000364121 118 ntBASIC2.52□□□□□ -2.01
CBX4O00257 RNU6-1019P-201ENST00000364424 107 ntBASIC2.52□□□□□ -2.01
CBX4O00257 RNU4-41P-201ENST00000364426 143 ntBASIC2.52□□□□□ -2.01
CBX4O00257 Y_RNA.267-201ENST00000364679 109 ntBASIC2.52□□□□□ -2.01
CBX4O00257 RNU6-383P-201ENST00000410864 94 ntBASIC2.52□□□□□ -2.01
CBX4O00257 HMGN2P35-201ENST00000412164 270 ntBASIC2.52□□□□□ -2.01
CBX4O00257 AC007064.1-201ENST00000412238 351 ntBASIC2.52□□□□□ -2.01
CBX4O00257 HMGN2P3-201ENST00000433603 273 ntBASIC2.52□□□□□ -2.01
CBX4O00257 HMGN2P5-201ENST00000436882 273 ntBASIC2.52□□□□□ -2.01
CBX4O00257 AC069257.2-201ENST00000441819 155 ntBASIC2.52□□□□□ -2.01
CBX4O00257 Y_RNA.662-201ENST00000516028 97 ntBASIC2.52□□□□□ -2.01
CBX4O00257 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms