Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 USP9YP21-201ENST00000420603 432 ntBASIC-1.62□□□□□ -2.67
CCDC88BA6NC98 MRPS10P1-201ENST00000448483 130 ntBASIC-1.62□□□□□ -2.67
CCDC88BA6NC98 SCARNA18B-201ENST00000458806 135 ntBASIC-1.62□□□□□ -2.67
CCDC88BA6NC98 RNU7-182P-201ENST00000459009 62 ntBASIC-1.62□□□□□ -2.67
CCDC88BA6NC98 AL445435.1-201ENST00000604232 665 ntBASIC-1.62□□□□□ -2.67
CCDC88BA6NC98 Z94722.1-201ENST00000604328 474 ntBASIC-1.62□□□□□ -2.67
CCDC88BA6NC98 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 SNAP23P1-201ENST00000433229 246 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AC068587.4-201ENST00000533893 186 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AC012414.2-201ENST00000559474 187 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AC104072.1-201ENST00000568817 668 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AC087683.1-201ENST00000591187 441 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AC091948.2-201ENST00000636510 279 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 Y_RNA.1-201ENST00000352915 104 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 Y_RNA.32-201ENST00000362589 110 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 Y_RNA.57-201ENST00000362806 113 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 MIR518F-201ENST00000384973 87 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 MTCO3P40-201ENST00000392516 676 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 RNU6-855P-201ENST00000410395 104 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 RNU2-62P-201ENST00000410868 191 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AL031779.1-201ENST00000415663 330 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 SNORA13-201ENST00000458790 133 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 RNU6-475P-201ENST00000516073 104 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 AGGF1P4-201ENST00000568249 801 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 SNORA43.4-201ENST00000629559 138 ntBASIC-1.63□□□□□ -2.67
CCDC88BA6NC98 RNU6-455P-201ENST00000384681 107 ntBASIC-1.64□□□□□ -2.67
CCDC88BA6NC98 SSR1P2-201ENST00000415208 787 ntBASIC-1.64□□□□□ -2.67
CCDC88BA6NC98 RNY4P37-201ENST00000516225 96 ntBASIC-1.64□□□□□ -2.67
CCDC88BA6NC98 AC099785.1-201ENST00000605697 437 ntBASIC-1.64□□□□□ -2.67
CCDC88BA6NC98 ZNF299P-201ENST00000406845 1804 ntBASIC-1.65□□□□□ -2.67
CCDC88BA6NC98 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.65□□□□□ -2.67
CCDC88BA6NC98 AC006210.1-201ENST00000424882 111 ntBASIC-1.65□□□□□ -2.67
CCDC88BA6NC98 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC-1.65□□□□□ -2.67
CCDC88BA6NC98 AL138752.1-201ENST00000452964 351 ntBASIC-1.65□□□□□ -2.67
CCDC88BA6NC98 AL445523.1-201ENST00000451184 1362 ntBASIC-1.66□□□□□ -2.68
CCDC88BA6NC98 RNU6-376P-201ENST00000384731 106 ntBASIC-1.66□□□□□ -2.68
CCDC88BA6NC98 RNU2-10P-201ENST00000516375 211 ntBASIC-1.66□□□□□ -2.68
CCDC88BA6NC98 AC072039.2-201ENST00000608883 439 ntBASIC-1.66□□□□□ -2.68
CCDC88BA6NC98 AC022306.3-201ENST00000619930 550 ntBASIC-1.66□□□□□ -2.68
CCDC88BA6NC98 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-1.67□□□□□ -2.68
CCDC88BA6NC98 RPS29P13-201ENST00000402041 169 ntBASIC-1.67□□□□□ -2.68
CCDC88BA6NC98 RNA5SP261-201ENST00000410536 106 ntBASIC-1.67□□□□□ -2.68
CCDC88BA6NC98 MTCO3P19-201ENST00000415864 321 ntBASIC-1.67□□□□□ -2.68
CCDC88BA6NC98 CALM2P2-201ENST00000428512 440 ntBASIC-1.67□□□□□ -2.68
CCDC88BA6NC98 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC-1.67□□□□□ -2.68
CCDC88BA6NC98 RNU6-158P-201ENST00000517104 100 ntBASIC-1.67□□□□□ -2.68
CCDC88BA6NC98 MIR6740-201ENST00000618268 113 ntBASIC-1.67□□□□□ -2.68
CCDC88BA6NC98 RNU6-740P-201ENST00000364734 105 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 SNORA1-201ENST00000384107 130 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 RNU6-901P-201ENST00000384593 106 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 SNORD93-201ENST00000408813 74 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 TIMM9P2-201ENST00000419324 266 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 AC090844.1-201ENST00000422019 156 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 EPS15P1-201ENST00000448836 336 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 AC010493.1-201ENST00000513479 292 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 SNORD38.3-201ENST00000516599 73 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 EIF1AXP2-201ENST00000555940 413 ntBASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-1.68□□□□□ -2.68
CCDC88BA6NC98 RNU6-1244P-201ENST00000363614 108 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-726P-201ENST00000364680 107 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-1336P-201ENST00000383886 109 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-136P-201ENST00000384663 107 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-721P-201ENST00000410155 105 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-607P-201ENST00000411283 108 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 BX276092.1-201ENST00000427368 251 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-1225P-201ENST00000516336 65 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 MTND4P33-201ENST00000556706 766 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 MIR4280-201ENST00000582178 76 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 AC010608.3-201ENST00000625048 527 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-502P-201ENST00000362419 108 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 SNORD115-42-201ENST00000364273 82 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 Y_RNA.408-201ENST00000383987 102 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 U8.17-201ENST00000391292 132 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU4-83P-201ENST00000410863 133 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 GMFBP1-201ENST00000467831 427 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-430P-201ENST00000517078 107 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 AL358944.1-201ENST00000528537 144 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 AC138207.3-201ENST00000585289 166 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 AP001836.1-201ENST00000604675 523 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 AL133255.1-201ENST00000606374 441 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 RNU6-86P-201ENST00000606534 107 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-1.69□□□□□ -2.68
CCDC88BA6NC98 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 SNORA75.4-201ENST00000391278 119 ntBASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 SNORD110-201ENST00000408189 75 ntBASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 RNU6-1165P-201ENST00000410119 107 ntBASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 SNORD45.4-201ENST00000516629 73 ntBASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC-1.7□□□□□ -2.68
CCDC88BA6NC98 MTATP6P2-201ENST00000603319 678 ntBASIC-1.7□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 221.6 ms