Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.777-201ENST00000516982 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 AC009127.3-201ENST00000570531 403 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 MIR4643-201ENST00000577473 78 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 MIR4282-201ENST00000583613 67 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.771-201ENST00000598668 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 AL162424.1-201ENST00000602325 221 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 AL078604.3-201ENST00000615580 211 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.789-201ENST00000622480 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.54-201ENST00000362766 105 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 SNORD115-3-201ENST00000363100 82 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 RNU1-22P-201ENST00000363334 158 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 SNORD27-201ENST00000363981 72 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-801P-201ENST00000364087 105 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.341-201ENST00000365341 102 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-117P-201ENST00000365415 107 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 MIR518A2-201ENST00000384966 87 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-855P-201ENST00000410395 104 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 AL135790.2-201ENST00000437701 267 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-1337P-201ENST00000516525 95 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 AC027419.1-201ENST00000522976 328 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 MIR5002-201ENST00000584713 97 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 MIR4438-201ENST00000585271 93 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 AC005357.1-201ENST00000588399 301 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 AC005786.1-201ENST00000588553 154 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 AC141273.2-201ENST00000618989 130 ntBASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.122-201ENST00000363331 96 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 RNY1-201ENST00000364228 113 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-662P-201ENST00000384253 104 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-1289P-201ENST00000384431 106 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-417P-201ENST00000384712 107 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 RNA5SP465-201ENST00000391195 109 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 MIR1283-2-201ENST00000408621 87 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 RNU2-2P-201ENST00000410396 191 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 BX510359.4-201ENST00000423750 193 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 AC097462.1-201ENST00000514125 324 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-111P-201ENST00000517179 105 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-794P-201ENST00000517261 64 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.783-201ENST00000613546 102 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 AC092881.1-201ENST00000638218 2733 ntBASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
PCDHA1Q9Y5I3 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 SNORA3A-201ENST00000364113 130 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.552-201ENST00000384665 112 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 MIR515-2-201ENST00000384883 83 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 MIR515-1-201ENST00000384884 83 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 RNA5SP270-201ENST00000411361 118 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 AL139156.1-201ENST00000412785 841 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 CST2P1-201ENST00000425770 87 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 AC011753.1-201ENST00000451001 220 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 RPS20P10-201ENST00000451209 253 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 AL139109.1-201ENST00000455491 297 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 SNORD2.1-201ENST00000458762 69 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 RNU4-71P-201ENST00000516258 113 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-388P-201ENST00000517012 105 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-389P-201ENST00000517048 105 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 AC007229.1-201ENST00000590455 412 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 AC022513.1-201ENST00000624512 117 ntBASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.36□□□□□ -2.03
PCDHA1Q9Y5I3 AC131280.1-202ENST00000624067 4211 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 ZNF720P1-201ENST00000562403 1939 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-1272P-201ENST00000362776 107 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.172-201ENST00000363765 102 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-338P-201ENST00000383888 105 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 MIR524-201ENST00000385242 87 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.637-201ENST00000459424 114 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 RNU7-99P-201ENST00000516271 62 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 RNU7-172P-201ENST00000517125 64 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 AC024995.1-201ENST00000523014 93 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 snoU18.1-201ENST00000629629 71 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 AC005336.3-201ENST00000623833 2679 ntBASIC2.35□□□□□ -2.03
PCDHA1Q9Y5I3 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 AL356292.1-201ENST00000283110 373 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-862P-201ENST00000362804 105 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.117-201ENST00000363294 101 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 SNORA72.4-201ENST00000384174 132 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 RNU11-3P-201ENST00000391111 133 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 EBAG9P1-201ENST00000418955 543 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 AC108059.2-201ENST00000434626 151 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 AC099677.2-201ENST00000436385 175 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-1278P-201ENST00000516130 107 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 SNORA31.11-201ENST00000516528 139 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 133.1 ms