Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SNORA72-201ENST00000384339 132 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 SNORA1.3-201ENST00000384676 136 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 MIR526A2-201ENST00000390198 65 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 RNU6-710P-201ENST00000410424 105 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AC012306.1-201ENST00000423267 114 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AL441985.1-201ENST00000457727 251 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AC010531.2-201ENST00000465012 153 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AC108729.3-201ENST00000513484 108 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 RNU6-581P-201ENST00000516214 105 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AC026421.1-201ENST00000519101 163 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AC021739.1-201ENST00000559631 174 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AC007012.1-201ENST00000567192 175 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 RPL30P11-203ENST00000598995 310 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 FAM71BP1-201ENST00000604431 523 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 SNORD115-40-201ENST00000606510 82 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 U6.98-201ENST00000637157 84 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 AC007256.1-201ENST00000392253 2765 ntBASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL17A1Q9UMD9 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 RNU6-873P-201ENST00000363833 107 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 RNA5SP125-201ENST00000364843 120 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 SNORA72.4-201ENST00000384174 132 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 AL355497.1-201ENST00000406262 551 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 U3.40-201ENST00000408706 208 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 RNU2-32P-201ENST00000411193 191 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 RPS26P42-201ENST00000413485 326 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 AC245047.4-201ENST00000433189 144 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 Y_RNA.690-201ENST00000516603 95 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 POLR3GP1-201ENST00000594073 261 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 AC002543.1-201ENST00000299783 1954 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 AC016717.2-201ENST00000609089 5141 ntBASIC3.8□□□□□ -1.8
COL17A1Q9UMD9 RNU6-1014P-201ENST00000383940 103 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 U8.13-201ENST00000390842 128 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 PGBD4P5-201ENST00000445958 426 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 RPL30P12-201ENST00000474666 353 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 ATP5EP1-201ENST00000510257 156 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 RNU6-928P-201ENST00000516876 104 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AC105137.2-201ENST00000569073 466 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 MIR3609-201ENST00000582661 80 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 MALAT1.1-201ENST00000618249 95 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 RNU6-1113P-201ENST00000384348 107 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 Y_RNA.622-201ENST00000411091 108 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AC099548.1-201ENST00000421443 426 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AC107626.1-201ENST00000471084 183 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 RNU6-504P-201ENST00000516568 104 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AC093331.1-201ENST00000521474 169 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 MIR378D2-201ENST00000580636 98 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AL356575.1-201ENST00000603008 283 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 AL110115.1-201ENST00000614396 364 ntBASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL17A1Q9UMD9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 RNU1-17P-201ENST00000363022 152 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 RNU6-1205P-201ENST00000363625 106 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 Y_RNA.179-201ENST00000363844 90 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 RNU6-1310P-201ENST00000384153 107 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 MIR590-201ENST00000385008 97 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 SNORA17.3-201ENST00000391159 129 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 MIR1263-201ENST00000408324 86 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 Y_RNA.593-201ENST00000410292 98 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 AC245517.4-201ENST00000448601 281 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 RPL39P39-201ENST00000455840 151 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 RNA5SP310-201ENST00000459084 116 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 RPL39P34-201ENST00000477141 156 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 SNORA9.3-201ENST00000516383 129 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 ACA59.2-201ENST00000517061 156 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 AC090897.2-201ENST00000581715 130 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 MIR3605-201ENST00000583214 100 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 MIR3136-201ENST00000583498 78 ntBASIC3.78□□□□□ -1.8
COL17A1Q9UMD9 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
COL17A1Q9UMD9 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL17A1Q9UMD9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL17A1Q9UMD9 Y_RNA.107-201ENST00000363190 121 ntBASIC3.77□□□□□ -1.81
COL17A1Q9UMD9 AL603914.1-201ENST00000401964 204 ntBASIC3.77□□□□□ -1.81
COL17A1Q9UMD9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.77□□□□□ -1.81
COL17A1Q9UMD9 AC019205.3-201ENST00000424573 156 ntBASIC3.77□□□□□ -1.81
COL17A1Q9UMD9 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.77□□□□□ -1.81
COL17A1Q9UMD9 Z98742.2-201ENST00000431564 187 ntBASIC3.77□□□□□ -1.81
COL17A1Q9UMD9 MTATP8P2-201ENST00000435212 202 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms