Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Y_RNA.80-201ENST00000362996 102 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 RNU6-271P-201ENST00000363858 105 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 RNU6-20P-201ENST00000384106 107 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.485-201ENST00000384395 102 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 MRPL42P3-201ENST00000401492 326 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 AL137792.2-201ENST00000443484 235 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 RPS26P55-201ENST00000471178 356 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 AC021506.2-201ENST00000612354 169 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 uc_338.22-201ENST00000622722 187 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 ZNF209P-201ENST00000593450 2304 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 MIR369-201ENST00000362155 70 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.112-201ENST00000363250 102 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 RNU6-626P-201ENST00000363354 107 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 RNU6-117P-201ENST00000365415 107 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 SNORD42.2-201ENST00000365570 69 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.395-201ENST00000383945 109 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 RNU6-1031P-201ENST00000384773 107 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 SDAD1P3-201ENST00000427380 333 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 AL161670.1-201ENST00000554348 137 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 AC005176.2-201ENST00000596933 147 ntBASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.53□□□□□ -2.16
CPSF3Q9UKF6 ICE2P2-201ENST00000483823 2787 ntBASIC1.53□□□□□ -2.17
CPSF3Q9UKF6 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 RNU6-440P-201ENST00000390882 105 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 RNU2-54P-201ENST00000410299 190 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.604-201ENST00000410574 102 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 RNU6-1199P-201ENST00000411249 104 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 AL160004.2-201ENST00000432935 350 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 SNRPGP13-201ENST00000442212 177 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 SUMO1P2-201ENST00000452524 304 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.639-201ENST00000458981 102 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.638-201ENST00000459374 113 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 AC091021.1-201ENST00000468051 388 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 RNU6-1170P-201ENST00000515974 106 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 AC015688.6-201ENST00000577737 104 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 AC006157.1-201ENST00000611750 366 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 AC007485.1-201ENST00000616755 206 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 MIR6079-201ENST00000635807 62 ntBASIC1.52□□□□□ -2.17
CPSF3Q9UKF6 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 SNORD1A-201ENST00000364968 72 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.431-201ENST00000384086 102 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 RNU6-950P-201ENST00000384651 107 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 RN7SKP51-201ENST00000410781 304 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 MTND1P14-201ENST00000427400 950 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 RNU7-94P-201ENST00000459576 63 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 SNORA40.14-201ENST00000516543 86 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 MIR4421-201ENST00000578133 69 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 AC091178.2-201ENST00000584401 117 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 MIR8063-201ENST00000621930 81 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.51□□□□□ -2.17
CPSF3Q9UKF6 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 SNORD114-7-201ENST00000362520 77 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.31-201ENST00000362574 102 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.394-201ENST00000383942 103 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.446-201ENST00000384178 104 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 RNU6-376P-201ENST00000384731 106 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 RNU6-308P-201ENST00000390957 107 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 AL031003.1-201ENST00000404229 172 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 RN7SKP200-201ENST00000410564 320 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 AC004965.1-201ENST00000413033 213 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 AC092473.1-201ENST00000441098 221 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 RPS29P23-201ENST00000458635 123 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 RNU6-63P-201ENST00000516690 95 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 AC010205.1-201ENST00000616668 449 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 AL138825.1-201ENST00000618587 192 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 AL121890.5-201ENST00000620848 304 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 AC127459.3-201ENST00000624328 466 ntBASIC1.5□□□□□ -2.17
CPSF3Q9UKF6 MTND4P29-201ENST00000503122 1372 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.61-201ENST00000362835 102 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 SNORD26-201ENST00000384147 75 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.458-201ENST00000384240 102 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 RNU6-505P-201ENST00000384427 107 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 AC027119.1-201ENST00000440877 241 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 RNU6-1278P-201ENST00000516130 107 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 RNA5SP61-201ENST00000516453 100 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 RNU1-92P-201ENST00000517017 135 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 RPL21P9-201ENST00000556149 474 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 MIR4423-201ENST00000580922 80 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 AC006380.1-201ENST00000603598 186 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 AC022441.3-201ENST00000605737 136 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 AL160413.1-201ENST00000622780 310 ntBASIC1.49□□□□□ -2.17
CPSF3Q9UKF6 AL161722.3-201ENST00000605789 2983 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.230-201ENST00000364348 109 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.813-201ENST00000364639 102 ntBASIC1.48□□□□□ -2.17
CPSF3Q9UKF6 Y_RNA.570-201ENST00000384750 101 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms