Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIR4423-201ENST00000580922 80 ntBASIC1.81□□□□□ -2.12
LIMA1Q9UHB6 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.81□□□□□ -2.12
LIMA1Q9UHB6 AC004467.1-201ENST00000615678 330 ntBASIC1.81□□□□□ -2.12
LIMA1Q9UHB6 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
LIMA1Q9UHB6 RNU6-414P-201ENST00000363705 104 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 RNU6-271P-201ENST00000363858 105 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 Y_RNA.243-201ENST00000364481 109 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 RNU6-407P-201ENST00000365280 104 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 SNORA4.2-201ENST00000365313 147 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 MIR30A-201ENST00000385092 71 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 RNU6-1109P-201ENST00000391187 107 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 AL606517.2-201ENST00000442855 241 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 snoU13.27-201ENST00000459278 104 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 SNORA44.1-201ENST00000517031 108 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 RNU2-12P-201ENST00000517216 168 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 MIR4255-201ENST00000579351 72 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 AC005176.2-201ENST00000596933 147 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 AL162730.1-201ENST00000605734 292 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 MIR8074-201ENST00000615081 81 ntBASIC1.8□□□□□ -2.12
LIMA1Q9UHB6 RNU1-22P-201ENST00000363334 158 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 Y_RNA.143-201ENST00000363520 106 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 Y_RNA.183-201ENST00000363882 113 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 Y_RNA.222-201ENST00000364264 102 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 RNU6-20P-201ENST00000384106 107 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 RNU6-937P-201ENST00000384325 106 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 MIR873-201ENST00000401120 77 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 RPL21P38-201ENST00000418090 167 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 HSPE1P21-201ENST00000438283 308 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 MTND3P2-201ENST00000438452 342 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 RPS27P1-201ENST00000450552 247 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 LINC01399-202ENST00000458450 244 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 RNA5SP20-201ENST00000515976 84 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 RNU6-250P-201ENST00000516958 103 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 CBX3P4-201ENST00000538909 354 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 MIR3198-2-201ENST00000577868 80 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 MIR4300-201ENST00000581016 96 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 AC022217.4-201ENST00000604389 163 ntBASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
LIMA1Q9UHB6 Y_RNA.64-201ENST00000362845 102 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 RNU6-626P-201ENST00000363354 107 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 Y_RNA.439-201ENST00000384119 94 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 Y_RNA.570-201ENST00000384750 101 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 MIR583-201ENST00000384846 75 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 COX6CP10-201ENST00000416832 224 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 OOSP1P1-201ENST00000423265 274 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 FTH1P12-201ENST00000432137 551 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 UBL5P3-201ENST00000475112 231 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 RN7SL429P-201ENST00000479090 223 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 AC098869.1-201ENST00000481627 292 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 RN7SL489P-201ENST00000486185 223 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 RN7SL327P-201ENST00000488659 223 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 RNU6-635P-201ENST00000516651 102 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 RNU7-172P-201ENST00000517125 64 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 AC073413.2-201ENST00000604332 360 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 Y_RNA.772-201ENST00000606692 102 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 RN7SL853P-201ENST00000617250 223 ntBASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.78□□□□□ -2.12
LIMA1Q9UHB6 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
LIMA1Q9UHB6 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 MIR424-201ENST00000362227 98 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.101-201ENST00000363154 102 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.124-201ENST00000363339 93 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 SNORD115-30-201ENST00000364117 82 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 RNU6-102P-201ENST00000384485 104 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.574-201ENST00000384766 95 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 U8.13-201ENST00000390842 128 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 SNORD115-46-201ENST00000390982 71 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 MIR1267-201ENST00000408723 78 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 RNU2-54P-201ENST00000410299 190 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 RN7SKP101-201ENST00000411376 320 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 MTCYBP9-201ENST00000431021 303 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 JTBP1-201ENST00000441314 247 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 DYNLT3P2-201ENST00000442517 295 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 AC008834.1-201ENST00000511612 175 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 MTCO2P24-201ENST00000515611 426 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 AC008269.2-201ENST00000561915 1105 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 MIR4709-201ENST00000577272 72 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 MIR3945-201ENST00000581853 98 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 AC006380.1-201ENST00000603598 186 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 PRR13P7-201ENST00000605538 430 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
LIMA1Q9UHB6 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.19-201ENST00000362462 99 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 SNORD114-7-201ENST00000362520 77 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 snoU2_19.2-201ENST00000363024 80 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 RNU6-770P-201ENST00000363929 105 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.230-201ENST00000364348 109 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 Y_RNA.361-201ENST00000365515 120 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 SNORD63-201ENST00000384262 68 ntBASIC1.76□□□□□ -2.13
LIMA1Q9UHB6 MIR215-201ENST00000384858 110 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms