Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 RNU6-63P-201ENST00000516690 95 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 SNORA74.3-201ENST00000517108 154 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 CYP3A137P-201ENST00000562436 69 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 AC090617.3-201ENST00000573670 475 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 MIR4273-201ENST00000582824 84 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 AC078883.4-201ENST00000623218 367 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 MIR3974-201ENST00000637126 96 ntBASIC0.27□□□□□ -2.37
VCX3AQ9NNX9 RNU6-1059P-201ENST00000363752 98 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 SNORD14.1-201ENST00000365609 90 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 SNORD116-11-201ENST00000383882 92 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 RNU6-483P-201ENST00000384088 108 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 SNORD111-201ENST00000408139 94 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 MIR1827-201ENST00000408549 66 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 ELOCP24-201ENST00000456370 334 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 AC011604.1-201ENST00000545978 196 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 RN7SKP299-201ENST00000606679 301 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 AC063944.3-201ENST00000609969 533 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 AL591926.4-201ENST00000616895 298 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 MIR5087-201ENST00000635826 76 ntBASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
VCX3AQ9NNX9 RNY3P3-201ENST00000363816 102 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 RNU6-454P-201ENST00000364292 107 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 RNU6-654P-201ENST00000364373 107 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 AL354751.2-201ENST00000415471 210 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 SUMO1P2-201ENST00000452524 304 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 AC074133.1-201ENST00000515696 183 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 RNU6-229P-201ENST00000516614 102 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 MIR4764-201ENST00000580680 88 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 MIR4762-201ENST00000585261 75 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 MIR3942-201ENST00000585264 109 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 AC104260.1-201ENST00000616660 539 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 AL442644.1-201ENST00000454390 3105 ntBASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
VCX3AQ9NNX9 RNA5SP499-201ENST00000363982 119 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 RNU6-1145P-201ENST00000384246 107 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 RNU6-1105P-201ENST00000384774 107 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 MIR15B-201ENST00000385045 98 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 MIR136-201ENST00000385207 82 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 MIR140-201ENST00000385282 100 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 RNU6-177P-201ENST00000411257 104 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 RNU6-1304P-201ENST00000411374 106 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 DLGAP5P1-201ENST00000430307 464 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 AC092628.1-201ENST00000436250 252 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 AC108729.3-201ENST00000513484 108 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 RNU7-43P-201ENST00000516554 64 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 AC018448.1-201ENST00000552843 316 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 MIR4300-201ENST00000581016 96 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 NBR2-204ENST00000587322 63 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 MIR6767-201ENST00000637302 66 ntBASIC0.24□□□□□ -2.37
VCX3AQ9NNX9 SNORD114-7-201ENST00000362520 77 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 Y_RNA.48-201ENST00000362710 103 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 SNORD113.3-201ENST00000364630 78 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 Y_RNA.361-201ENST00000365515 120 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 AC117470.1-201ENST00000381974 330 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 RNU6-842P-201ENST00000384269 107 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 RNU6-332P-201ENST00000391193 108 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 MIR1302-7-201ENST00000408841 72 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 Y_RNA.621-201ENST00000411065 96 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 USP9YP30-201ENST00000430729 455 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 RNU6-625P-201ENST00000459412 107 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 AC010486.3-201ENST00000511602 785 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 SNORA18.7-201ENST00000516910 131 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 AF250324.2-201ENST00000608299 610 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 Z99129.1-201ENST00000612510 255 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 MIR3674-201ENST00000636576 68 ntBASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.23□□□□□ -2.37
VCX3AQ9NNX9 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 Y_RNA.38-201ENST00000362617 102 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 RNY1P10-201ENST00000363268 113 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 Y_RNA.243-201ENST00000364481 109 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 Y_RNA.364-201ENST00000365532 101 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 Y_RNA.498-201ENST00000384460 102 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 MIR190B-201ENST00000401119 79 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 RNA5SP95-201ENST00000410319 137 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 RNA5SP511-201ENST00000410487 115 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 AL392103.1-201ENST00000447000 198 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms