Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL445685.2-201ENST00000422551 342 ntBASIC1.9□□□□□ -2.11
PCDH9Q9HC56 AL353689.1-201ENST00000438895 199 ntBASIC1.9□□□□□ -2.11
PCDH9Q9HC56 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.9□□□□□ -2.11
PCDH9Q9HC56 AC010409.1-201ENST00000487382 476 ntBASIC1.9□□□□□ -2.11
PCDH9Q9HC56 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.9□□□□□ -2.11
PCDH9Q9HC56 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.9□□□□□ -2.11
PCDH9Q9HC56 AC022513.1-201ENST00000624512 117 ntBASIC1.9□□□□□ -2.11
PCDH9Q9HC56 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
PCDH9Q9HC56 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PCDH9Q9HC56 Y_RNA.287-201ENST00000364853 94 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 RNU6-472P-201ENST00000384299 107 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 RNU6-505P-201ENST00000384427 107 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
PCDH9Q9HC56 SNORA53-201ENST00000391141 249 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 RNA5SP467-201ENST00000391274 118 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 RNU6-1186P-201ENST00000410429 97 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 RNA5SP20-201ENST00000515976 84 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 RNU6-1146P-201ENST00000516282 102 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 RNU6-1338P-201ENST00000516328 91 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.89□□□□□ -2.11
PCDH9Q9HC56 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.89□□□□□ -2.11
PCDH9Q9HC56 AC110588.1-201ENST00000559699 137 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 MIR4299-201ENST00000577899 72 ntBASIC1.89□□□□□ -2.11
PCDH9Q9HC56 AL391987.6-201ENST00000305671 199 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 SNORA27.1-201ENST00000362604 124 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 snoU2-30.2-201ENST00000362805 70 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 RNU4-80P-201ENST00000363200 141 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 Y_RNA.288-201ENST00000364854 92 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 RNU6-702P-201ENST00000364982 107 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 RNU6-136P-201ENST00000384663 107 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.88□□□□□ -2.11
PCDH9Q9HC56 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.88□□□□□ -2.11
PCDH9Q9HC56 snoU13.15-201ENST00000459407 104 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 RNA5SP182-201ENST00000516064 82 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 RNU2-31P-201ENST00000516954 155 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.88□□□□□ -2.11
PCDH9Q9HC56 RPL21P9-201ENST00000556149 474 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 MIR3684-201ENST00000579779 74 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 MIR4438-201ENST00000585271 93 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 AC104984.5-201ENST00000586878 94 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 AC037487.3-201ENST00000606668 112 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 AP001282.2-201ENST00000616149 309 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 MIR338-201ENST00000636369 67 ntBASIC1.88□□□□□ -2.11
PCDH9Q9HC56 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
PCDH9Q9HC56 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
PCDH9Q9HC56 SNORA25.1-201ENST00000362326 128 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 SNORA33-201ENST00000363664 130 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 Y_RNA.193-201ENST00000363979 102 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 RNU1-96P-201ENST00000364163 162 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 Y_RNA.361-201ENST00000365515 120 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 Y_RNA.418-201ENST00000384029 102 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 Y_RNA.452-201ENST00000384202 108 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 Y_RNA.556-201ENST00000384677 113 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 SNORA40.19-201ENST00000390846 128 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 MIR873-201ENST00000401120 77 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 MIR1261-201ENST00000408659 82 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 RNU2-38P-201ENST00000410856 79 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 AC107393.1-201ENST00000512403 346 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 RNU6-63P-201ENST00000516690 95 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 AL137100.2-201ENST00000555786 315 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 MIR4419B-201ENST00000577260 68 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 AC024614.2-201ENST00000577584 372 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 MIR3124-201ENST00000582636 67 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 AC005828.6-201ENST00000606610 232 ntBASIC1.87□□□□□ -2.11
PCDH9Q9HC56 AL356292.1-201ENST00000283110 373 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 RNU6-271P-201ENST00000363858 105 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 RNU6-514P-201ENST00000384208 107 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 RNA5SP323-201ENST00000391094 133 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 AC024067.1-201ENST00000426199 223 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 MTCO1P5-201ENST00000433573 344 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 AC003989.2-201ENST00000440224 169 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 RPL23AP6-201ENST00000446637 472 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.86□□□□□ -2.11
PCDH9Q9HC56 SNORD127-201ENST00000458892 86 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 SNORA70.12-201ENST00000516084 153 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 MIR5094-201ENST00000578766 85 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 AL512605.2-201ENST00000592972 256 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 MIR6715A-201ENST00000615929 79 ntBASIC1.86□□□□□ -2.11
PCDH9Q9HC56 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.86□□□□□ -2.11
PCDH9Q9HC56 SNORD48-201ENST00000364953 64 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 Y_RNA.477-201ENST00000384352 108 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 MIR583-201ENST00000384846 75 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 AL117342.1-201ENST00000404861 406 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 RNU6-855P-201ENST00000410395 104 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
PCDH9Q9HC56 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.85□□□□□ -2.11
PCDH9Q9HC56 AC099677.2-201ENST00000436385 175 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 SUMO1P2-201ENST00000452524 304 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 RNU6-1132P-201ENST00000459214 107 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 snoU13.26-201ENST00000459452 105 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 SERF1AP1-201ENST00000514575 187 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 RNU6-1337P-201ENST00000516525 95 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 AC005786.1-201ENST00000588553 154 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 AC012433.1-201ENST00000588916 398 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 AL353149.1-201ENST00000610667 244 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.85□□□□□ -2.11
PCDH9Q9HC56 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.85□□□□□ -2.11
PCDH9Q9HC56 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
PCDH9Q9HC56 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms