Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MIRLET7G-201ENST00000362280 84 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 RNA5SP160-201ENST00000364866 120 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 SNORA8-201ENST00000384574 139 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 RNU6-376P-201ENST00000384731 106 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 AC003989.2-201ENST00000440224 169 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 RPS26P55-201ENST00000471178 356 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 RNU6-1278P-201ENST00000516130 107 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 AC004817.2-201ENST00000561794 651 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 MIR6895-201ENST00000613497 78 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 AP001282.2-201ENST00000616149 309 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 U1.36-201ENST00000620684 176 ntBASIC2.12□□□□□ -2.07
PAAF1Q9BRP4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 AC005336.3-201ENST00000623833 2679 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.341-201ENST00000365341 102 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.418-201ENST00000384029 102 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 MIR144-201ENST00000384886 86 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 SNORA40.18-201ENST00000391200 128 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 RNU11-5P-201ENST00000391216 129 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 RNU2-38P-201ENST00000410856 79 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 RNU2-61P-201ENST00000411069 191 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 MTCO1P5-201ENST00000433573 344 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 AC011753.1-201ENST00000451001 220 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 RPL23AP42-201ENST00000471152 471 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 AC097462.1-201ENST00000514125 324 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 RNU6-1337P-201ENST00000516525 95 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 AC069114.2-201ENST00000604699 304 ntBASIC2.11□□□□□ -2.07
PAAF1Q9BRP4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.136-201ENST00000363444 102 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.193-201ENST00000363979 102 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 RNU4-13P-201ENST00000364019 141 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 RNU6-136P-201ENST00000384663 107 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 AL117342.1-201ENST00000404861 406 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 RNA5SP501-201ENST00000410990 112 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 RNA5SP450-201ENST00000411206 102 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 EBAG9P1-201ENST00000418955 543 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 AC099677.2-201ENST00000436385 175 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 HSPE1P13-201ENST00000451143 297 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 SNORD127-201ENST00000458892 86 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 RNU6-63P-201ENST00000516690 95 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 RNU2-19P-201ENST00000517288 84 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 AP000942.4-201ENST00000604811 241 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 AC062037.2-201ENST00000610137 73 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.1□□□□□ -2.07
PAAF1Q9BRP4 MIR335-201ENST00000362173 94 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.54-201ENST00000362766 105 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 RNU1-22P-201ENST00000363334 158 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 SNORA26.9-201ENST00000391322 122 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 HSPE1P21-201ENST00000438283 308 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 RNU6-1132P-201ENST00000459214 107 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 AC055731.1-201ENST00000474387 401 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 RNU7-99P-201ENST00000516271 62 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 AC024995.1-201ENST00000523014 93 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 AC073413.2-201ENST00000604332 360 ntBASIC2.09□□□□□ -2.07
PAAF1Q9BRP4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.08
PAAF1Q9BRP4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.09□□□□□ -2.08
PAAF1Q9BRP4 ZNF355P-201ENST00000427301 3216 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 SNORA33-201ENST00000363664 130 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.361-201ENST00000365515 120 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.401-201ENST00000383965 117 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 SNORA80E-201ENST00000384744 137 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 MIR583-201ENST00000384846 75 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 RNU2-7P-201ENST00000410794 178 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 RNA5SP57-201ENST00000459463 123 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 RPL39P38-201ENST00000467018 153 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 AC091959.1-201ENST00000495857 238 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 RNU6-191P-201ENST00000516295 94 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 RNVU1-2-201ENST00000516326 135 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 RNA5SP82-201ENST00000516707 92 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 RNU6-548P-201ENST00000517083 115 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 AC022513.1-201ENST00000624512 117 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 MIR203B-201ENST00000636080 86 ntBASIC2.08□□□□□ -2.08
PAAF1Q9BRP4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.14-201ENST00000362415 103 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 RNA5SP276-201ENST00000362580 94 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.44-201ENST00000362676 108 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 RNU6-1019P-201ENST00000364424 107 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 SNORA48.1-201ENST00000390879 135 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 AL445685.2-201ENST00000422551 342 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 MTND2P29-201ENST00000438595 412 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 AL021397.1-201ENST00000451806 248 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 AL163195.1-201ENST00000496941 348 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 RPL23AP63-201ENST00000498752 471 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.668-201ENST00000516233 93 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 AC012433.1-201ENST00000588916 398 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 AL353997.5-201ENST00000618886 171 ntBASIC2.07□□□□□ -2.08
PAAF1Q9BRP4 Y_RNA.350-201ENST00000365409 98 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms