Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
CCDC140Q96MF4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC140Q96MF4 RNU1-33P-201ENST00000364249 162 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 MIR183-201ENST00000384958 110 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 RNU6-460P-201ENST00000391158 108 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC2.57□□□□□ -2
CCDC140Q96MF4 SCGB1D5P-201ENST00000515134 247 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 RNA5SP153-201ENST00000516498 76 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 Y_RNA.714-201ENST00000517065 90 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 SNORA70.24-201ENST00000517233 118 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 AC069114.2-201ENST00000604699 304 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 SNORD14A-201ENST00000606526 91 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 CTSLP2-204ENST00000629029 392 ntBASIC2.57□□□□□ -2
CCDC140Q96MF4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
CCDC140Q96MF4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC140Q96MF4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
CCDC140Q96MF4 RNU6-1084P-201ENST00000362498 107 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 RNY1P11-201ENST00000363759 113 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 SNORA25.7-201ENST00000364375 127 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 RNU6-1019P-201ENST00000364424 107 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 Y_RNA.542-201ENST00000384641 111 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 MIR483-201ENST00000385070 76 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 MIR522-201ENST00000385071 87 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 MIR802-201ENST00000390235 94 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 Y_RNA.586-201ENST00000391146 98 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 MIR1283-2-201ENST00000408621 87 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 RNA5SP229-201ENST00000410809 99 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 RNA5SP492-201ENST00000411330 114 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 RNA5SP270-201ENST00000411361 118 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 AC107083.1-201ENST00000439643 279 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.56□□□□□ -2
CCDC140Q96MF4 HMGN1P18-201ENST00000457642 277 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 RNU6-365P-201ENST00000517113 106 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 MIR3646-201ENST00000578301 84 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 MIR4662B-201ENST00000579498 81 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 U6.105-201ENST00000637379 88 ntBASIC2.56□□□□□ -2
CCDC140Q96MF4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC140Q96MF4 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC140Q96MF4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC140Q96MF4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC140Q96MF4 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC140Q96MF4 RNU6-1138P-201ENST00000365359 106 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 RNU6-81P-201ENST00000365608 104 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 Y_RNA.420-201ENST00000384043 110 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 SNORA40-201ENST00000388090 126 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 RNU6-440P-201ENST00000390882 105 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 SNORA26-201ENST00000391286 122 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 SNORA75.5-201ENST00000391291 81 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 HMGN2P39-201ENST00000398005 273 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.55□□□□□ -2
CCDC140Q96MF4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.55□□□□□ -2
CCDC140Q96MF4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.55□□□□□ -2
CCDC140Q96MF4 AC092991.1-201ENST00000477176 376 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 AC096725.1-201ENST00000514266 313 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 RNVU1-2-201ENST00000516326 135 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 AC090142.3-201ENST00000519012 385 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC140Q96MF4 uc_338.1-201ENST00000612113 180 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 MIR7975-201ENST00000619350 68 ntBASIC2.55□□□□□ -2
CCDC140Q96MF4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CCDC140Q96MF4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC140Q96MF4 RNU6-978P-201ENST00000364371 103 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 RNU6-597P-201ENST00000365620 102 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 MIR491-201ENST00000384877 84 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 AC245047.4-201ENST00000433189 144 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 CST9LP2-201ENST00000437612 320 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 STAG3L5P-204ENST00000443759 179 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 RPL21P10-201ENST00000463521 490 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.54□□□□□ -2
CCDC140Q96MF4 SCARNA20.6-201ENST00000517251 106 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.54□□□□□ -2
CCDC140Q96MF4 AL160236.1-201ENST00000556317 195 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 MIR8054-201ENST00000620877 86 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 AC091953.5-201ENST00000622919 233 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.54□□□□□ -2
CCDC140Q96MF4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.54□□□□□ -2
CCDC140Q96MF4 MAPK10-266ENST00000641066 6555 ntBASIC2.54□□□□□ -2
CCDC140Q96MF4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.54□□□□□ -2
CCDC140Q96MF4 RNU1-109P-201ENST00000383960 147 ntBASIC2.53□□□□□ -2
CCDC140Q96MF4 SNORA9-201ENST00000384215 133 ntBASIC2.53□□□□□ -2
CCDC140Q96MF4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.53□□□□□ -2
CCDC140Q96MF4 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.53□□□□□ -2
CCDC140Q96MF4 MTND4LP9-201ENST00000427694 174 ntBASIC2.53□□□□□ -2
CCDC140Q96MF4 FTH1P12-201ENST00000432137 551 ntBASIC2.53□□□□□ -2
CCDC140Q96MF4 RNU7-197P-201ENST00000458836 62 ntBASIC2.53□□□□□ -2
CCDC140Q96MF4 RNU6-1211P-201ENST00000459179 105 ntBASIC2.53□□□□□ -2
CCDC140Q96MF4 AC008507.4-201ENST00000585464 127 ntBASIC2.53□□□□□ -2
CCDC140Q96MF4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.53□□□□□ -2
CCDC140Q96MF4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.53□□□□□ -2
CCDC140Q96MF4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC140Q96MF4 SNORD50B-201ENST00000364995 70 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 RNVU1-14-201ENST00000384770 164 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CCDC140Q96MF4 RNU2-7P-201ENST00000410794 178 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 AC092185.1-201ENST00000491371 97 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 Y_RNA.666-201ENST00000516187 112 ntBASIC2.52□□□□□ -2.01
CCDC140Q96MF4 RNU6-504P-201ENST00000516568 104 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms