Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 AP004217.1-201ENST00000480579 346 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.686-201ENST00000516548 134 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 AC112693.2-201ENST00000556538 232 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 MIR4753-201ENST00000585119 83 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 AC025754.2-201ENST00000606491 432 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 RNA5SP393-201ENST00000363423 117 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.229-201ENST00000364347 113 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 RNU6-407P-201ENST00000365280 104 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.341-201ENST00000365341 102 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 RNU6-643P-201ENST00000384018 107 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 RNU6-80P-201ENST00000384195 107 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 MIR548B-201ENST00000385247 97 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 AL590004.2-201ENST00000404787 371 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 AC123900.1-201ENST00000420390 96 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 AC245102.2-201ENST00000448956 180 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 RNA5SP356-201ENST00000515972 94 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 RNU6-659P-201ENST00000516454 104 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 MIR5688-201ENST00000580619 83 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 MIR203B-201ENST00000636080 86 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 AC096644.4-201ENST00000563417 2912 ntBASIC2.74□□□□□ -1.97
CLIP3Q96DZ5 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.99-201ENST00000363138 105 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 RNU6-1205P-201ENST00000363625 106 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 U3.8-201ENST00000363675 217 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 RNU6-1305P-201ENST00000364353 104 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 RNU1-52P-201ENST00000384190 164 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 RNU6-768P-201ENST00000384683 107 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.563-201ENST00000384707 108 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 RNU6-460P-201ENST00000391158 108 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 SNORD88.1-201ENST00000408684 91 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 AC006461.1-201ENST00000412637 326 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 AC010154.1-201ENST00000425857 269 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 RNA5SP82-201ENST00000516707 92 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 RNA5SP137-201ENST00000516833 135 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 AC006023.1-201ENST00000603944 259 ntBASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.73□□□□□ -1.97
CLIP3Q96DZ5 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 RNU6-199P-201ENST00000362954 107 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.251-201ENST00000364551 99 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 SNORD14D-201ENST00000384390 87 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 MIR15B-201ENST00000385045 98 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 MIR1262-201ENST00000408276 93 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 RN7SKP284-201ENST00000411002 343 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 AC007064.1-201ENST00000412238 351 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 AL121914.1-201ENST00000450188 156 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 HMGN2P9-201ENST00000476875 229 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 RNU4-57P-201ENST00000515980 135 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 RNU1-104P-201ENST00000517280 175 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 SNORD14A-201ENST00000606526 91 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 TUG1_4.1-201ENST00000619464 181 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 AP001340.1-201ENST00000624405 217 ntBASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
CLIP3Q96DZ5 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 RNU6-834P-201ENST00000362367 110 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 U8.7-201ENST00000364940 136 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 AL606845.1-201ENST00000404881 255 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 MIR1278-201ENST00000408753 81 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 MIR3646-201ENST00000578301 84 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 MIR4513-201ENST00000581077 86 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 MIR3670-2-201ENST00000582974 65 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 MIR3670-1-201ENST00000584160 65 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 MIR3670-3-201ENST00000584855 65 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 AL031274.2-201ENST00000599419 203 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 MIR3670-4-201ENST00000612260 65 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 AC022202.1-201ENST00000613515 211 ntBASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CLIP3Q96DZ5 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 AL035425.3-201ENST00000564206 4996 ntBASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 Y_RNA.124-201ENST00000363339 93 ntBASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 RNU6-1228P-201ENST00000391014 107 ntBASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 RN7SKP132-201ENST00000516001 208 ntBASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
CLIP3Q96DZ5 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 174.5 ms