Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 Y_RNA.16-201ENST00000362421 102 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 RNU4-80P-201ENST00000363200 141 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 Y_RNA.193-201ENST00000363979 102 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 SNORA67.3-201ENST00000384366 140 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 RNA5SP467-201ENST00000391274 118 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.38□□□□□ -2.03
HPS3Q969F9 snoU13.23-201ENST00000458863 104 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 AC055731.1-201ENST00000474387 401 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 AC097462.1-201ENST00000514125 324 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 RNU7-99P-201ENST00000516271 62 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 SCARNA24.2-201ENST00000516968 130 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 MIR1273D-201ENST00000577266 86 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 AP001282.2-201ENST00000616149 309 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.38□□□□□ -2.03
HPS3Q969F9 AL596028.1-201ENST00000326971 197 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 RNU1-22P-201ENST00000363334 158 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 Y_RNA.237-201ENST00000364439 102 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 Y_RNA.418-201ENST00000384029 102 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 SNORA8-201ENST00000384574 139 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 SNORA48.1-201ENST00000390879 135 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 RNU6-855P-201ENST00000410395 104 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 AC099677.2-201ENST00000436385 175 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 Y_RNA.638-201ENST00000459374 113 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 RPS27P21-201ENST00000486977 252 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 AC079804.2-201ENST00000490376 200 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.37□□□□□ -2.03
HPS3Q969F9 MIR514B-201ENST00000516774 80 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 MIR5094-201ENST00000578766 85 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 AC022513.1-201ENST00000624512 117 ntBASIC2.37□□□□□ -2.03
HPS3Q969F9 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
HPS3Q969F9 RNU6-1019P-201ENST00000364424 107 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 Y_RNA.341-201ENST00000365341 102 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 RNU6-574P-201ENST00000384265 107 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 SNORA64-201ENST00000384674 134 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 RNU6-376P-201ENST00000384731 106 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 RNA5SP501-201ENST00000410990 112 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 EBAG9P1-201ENST00000418955 543 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 MTCO1P5-201ENST00000433573 344 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
HPS3Q969F9 AC069257.2-201ENST00000441819 155 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 RNA5SP200-201ENST00000516360 103 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 RNU6-1337P-201ENST00000516525 95 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 SCARNA16.3-201ENST00000516595 184 ntBASIC2.36□□□□□ -2.03
HPS3Q969F9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.36□□□□□ -2.03
HPS3Q969F9 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.35□□□□□ -2.03
HPS3Q969F9 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
HPS3Q969F9 Y_RNA.456-201ENST00000384232 111 ntBASIC2.35□□□□□ -2.03
HPS3Q969F9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.35□□□□□ -2.03
HPS3Q969F9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
HPS3Q969F9 HMGN2P38-201ENST00000423806 265 ntBASIC2.35□□□□□ -2.03
HPS3Q969F9 SNORD127-201ENST00000458892 86 ntBASIC2.35□□□□□ -2.03
HPS3Q969F9 Y_RNA.668-201ENST00000516233 93 ntBASIC2.35□□□□□ -2.03
HPS3Q969F9 AC062037.2-201ENST00000610137 73 ntBASIC2.35□□□□□ -2.03
HPS3Q969F9 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.35□□□□□ -2.03
HPS3Q969F9 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
HPS3Q969F9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
HPS3Q969F9 AL356292.1-201ENST00000283110 373 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 RNA5SP160-201ENST00000364866 120 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 RNA5SP37-201ENST00000365420 130 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 Y_RNA.368-201ENST00000365547 113 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 Y_RNA.518-201ENST00000384552 113 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 AL139156.1-201ENST00000412785 841 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 RNU7-94P-201ENST00000459576 63 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 AC108210.2-201ENST00000503681 201 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 RNU6-191P-201ENST00000516295 94 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 MIR6873-201ENST00000622788 63 ntBASIC2.34□□□□□ -2.03
HPS3Q969F9 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HPS3Q969F9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HPS3Q969F9 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HPS3Q969F9 RNU4-13P-201ENST00000364019 141 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 Y_RNA.401-201ENST00000383965 117 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 RNA5SP233-201ENST00000459153 113 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 RNU6-1132P-201ENST00000459214 107 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 RPL39P38-201ENST00000467018 153 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 AC090255.1-201ENST00000495779 349 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 AC091959.1-201ENST00000495857 238 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 RNVU1-2-201ENST00000516326 135 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.33□□□□□ -2.04
HPS3Q969F9 SNRPGP19-201ENST00000603826 189 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 AP000942.4-201ENST00000604811 241 ntBASIC2.33□□□□□ -2.04
HPS3Q969F9 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HPS3Q969F9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
HPS3Q969F9 AC008555.8-201ENST00000623602 2168 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 Y_RNA.14-201ENST00000362415 103 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 SNORA33-201ENST00000363664 130 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 RNU6-482P-201ENST00000391068 107 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 MIR548H3-201ENST00000408771 118 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 RNA5SP338-201ENST00000410495 85 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 RNU2-38P-201ENST00000410856 79 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 AL163195.1-201ENST00000496941 348 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 SNORA27.4-201ENST00000516650 95 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 AC136628.3-201ENST00000521868 290 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 AC084364.2-201ENST00000546924 395 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.32□□□□□ -2.04
HPS3Q969F9 AC073413.2-201ENST00000604332 360 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.32□□□□□ -2.04
HPS3Q969F9 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.32□□□□□ -2.04
HPS3Q969F9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms