Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-966P-201ENST00000516479 104 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 SNORA25.14-201ENST00000516481 132 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 AL442163.3-201ENST00000554110 156 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 CYP3A52P-201ENST00000563326 91 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 AC055872.1-201ENST00000570978 278 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 MIR5006-201ENST00000583027 110 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 AC104695.3-201ENST00000604052 296 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 AC091812.1-201ENST00000432235 1948 ntBASIC1.28□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-727P-201ENST00000363592 107 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-975P-201ENST00000384296 105 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 RNY3P4-201ENST00000384428 101 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 SNORA69.1-201ENST00000390904 137 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-130P-201ENST00000411112 103 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 AC005840.1-201ENST00000498412 377 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-911P-201ENST00000516523 104 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-1012P-201ENST00000516606 109 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 RNU7-4P-201ENST00000516961 62 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 AC022868.1-201ENST00000517767 391 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 AP003072.1-201ENST00000531740 145 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 AC006600.1-201ENST00000572529 153 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 SNRPGP20-201ENST00000604477 205 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 AC006157.1-201ENST00000611750 366 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 PART1_1.1-201ENST00000611761 217 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 U2.1-201ENST00000618978 145 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 U6.92-201ENST00000636464 89 ntBASIC1.27□□□□□ -2.21
ZNF540Q8NDQ6 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 U8.1-201ENST00000362843 134 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-961P-201ENST00000363893 105 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.327-201ENST00000365201 102 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 SNORA33.2-201ENST00000365413 134 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-793P-201ENST00000384233 104 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-541P-201ENST00000384709 110 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MIR586-201ENST00000385035 97 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MIR758-201ENST00000390227 88 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MIR1302-11-201ENST00000408051 138 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MIR1253-201ENST00000408273 105 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MIR1302-9-201ENST00000408365 138 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MIR1302-10-201ENST00000408734 138 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AC016909.1-201ENST00000415916 166 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AC005534.2-201ENST00000431047 433 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-475P-201ENST00000516073 104 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 RN7SKP49-201ENST00000516675 260 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AC091144.1-201ENST00000519573 138 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AC015720.1-201ENST00000565251 277 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MIR4680-201ENST00000580906 66 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 VN1R91P-201ENST00000594377 169 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 7SK.7-201ENST00000603504 247 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MIR1302-2-201ENST00000607096 138 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AL021879.1-201ENST00000611756 288 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 AC010999.1-201ENST00000611856 324 ntBASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.26□□□□□ -2.21
ZNF540Q8NDQ6 MRPL42P3-201ENST00000401492 326 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 AC114482.1-201ENST00000418010 247 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 AC016717.1-201ENST00000448918 286 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 SNORA40.9-201ENST00000515895 93 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.683-201ENST00000516508 93 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 SNORA40.14-201ENST00000516543 86 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 RN7SKP88-201ENST00000516847 250 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-1198P-201ENST00000516904 67 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 MIR4421-201ENST00000578133 69 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 MIR4719-201ENST00000585233 84 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 AL645939.4-201ENST00000604495 135 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 SNORD11B-201ENST00000607707 90 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 AL365434.2-201ENST00000607979 234 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 7SK.8-201ENST00000612110 250 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 7SK.11-201ENST00000615477 250 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 AC011476.5-201ENST00000615594 130 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 7SK.13-201ENST00000622040 250 ntBASIC1.25□□□□□ -2.21
ZNF540Q8NDQ6 RNA5SP327-201ENST00000362494 101 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.27-201ENST00000362540 103 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.39-201ENST00000362620 98 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.153-201ENST00000363615 91 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 Y_RNA.179-201ENST00000363844 90 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-280P-201ENST00000364145 104 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-454P-201ENST00000364292 107 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-879P-201ENST00000364328 108 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-450P-201ENST00000364654 107 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 RNU6-823P-201ENST00000391042 103 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 RNA5SP323-201ENST00000391094 133 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 SNORD12B-201ENST00000410433 91 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 AC015922.2-201ENST00000435593 184 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 RPEP5-201ENST00000441137 268 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.24□□□□□ -2.21
ZNF540Q8NDQ6 AC010655.3-201ENST00000478818 450 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms