Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MIR3912-201ENST00000577566 105 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 AC069431.2-201ENST00000604149 1099 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 Z94722.1-201ENST00000604328 474 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 uc_338.19-201ENST00000616808 99 ntBASIC-1.74□□□□□ -2.69
LINC00643Q86TS7 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 RNU6-1175P-201ENST00000365200 107 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 SNORA75.4-201ENST00000391278 119 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 MIR1284-201ENST00000408337 120 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 RNU6-1165P-201ENST00000410119 107 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 SSR1P2-201ENST00000415208 787 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 MTATP6P23-201ENST00000440153 476 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 AC105029.1-201ENST00000520250 669 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 AC022960.3-201ENST00000619794 441 ntBASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.75□□□□□ -2.69
LINC00643Q86TS7 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-1.76□□□□□ -2.69
LINC00643Q86TS7 SNORD114-25-201ENST00000363742 72 ntBASIC-1.76□□□□□ -2.69
LINC00643Q86TS7 RNU6-609P-201ENST00000365459 107 ntBASIC-1.77□□□□□ -2.69
LINC00643Q86TS7 RNA5SP494-201ENST00000410653 129 ntBASIC-1.77□□□□□ -2.69
LINC00643Q86TS7 RNU6-1133P-201ENST00000410963 100 ntBASIC-1.77□□□□□ -2.69
LINC00643Q86TS7 ZNF736P7Y-201ENST00000425158 820 ntBASIC-1.77□□□□□ -2.69
LINC00643Q86TS7 AC093303.1-201ENST00000514549 295 ntBASIC-1.77□□□□□ -2.69
LINC00643Q86TS7 SNORD87-201ENST00000364849 89 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 RNU6-827P-201ENST00000365553 106 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 AC090844.1-201ENST00000422019 156 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 MTCO2P11-201ENST00000431069 680 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 MTND4LP7-201ENST00000431728 294 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 RNU6-1265P-201ENST00000516342 103 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 SNORD45.4-201ENST00000516629 73 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 AC139792.3-201ENST00000623525 224 ntBASIC-1.78□□□□□ -2.69
LINC00643Q86TS7 Y_RNA.416-201ENST00000384014 113 ntBASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 MIR516B1-201ENST00000385211 90 ntBASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 MIR23A-201ENST00000385245 73 ntBASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 RNU4-83P-201ENST00000410863 133 ntBASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 AL445193.1-201ENST00000441183 141 ntBASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 AL359672.1-201ENST00000442302 409 ntBASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 AC091965.4-201ENST00000607691 587 ntBASIC-1.79□□□□□ -2.7
LINC00643Q86TS7 Y_RNA.192-201ENST00000363977 102 ntBASIC-1.8□□□□□ -2.7
LINC00643Q86TS7 Y_RNA.226-201ENST00000364337 114 ntBASIC-1.8□□□□□ -2.7
LINC00643Q86TS7 RNU6-455P-201ENST00000384681 107 ntBASIC-1.8□□□□□ -2.7
LINC00643Q86TS7 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-1.8□□□□□ -2.7
LINC00643Q86TS7 HMGN2P32-201ENST00000444648 269 ntBASIC-1.8□□□□□ -2.7
LINC00643Q86TS7 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-1.8□□□□□ -2.7
LINC00643Q86TS7 MIR4499-201ENST00000584834 69 ntBASIC-1.8□□□□□ -2.7
LINC00643Q86TS7 MIR4791-201ENST00000607666 84 ntBASIC-1.8□□□□□ -2.7
LINC00643Q86TS7 RNU6-792P-201ENST00000363490 107 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 RNU6-726P-201ENST00000364680 107 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 MIR588-201ENST00000384900 83 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 Z95118.1-201ENST00000421372 247 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 SNRPGP10-201ENST00000432323 225 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 RPL7P42-201ENST00000481005 679 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 RNU6-323P-201ENST00000521915 107 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 MTND4P33-201ENST00000556706 766 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 MIR4636-201ENST00000582271 80 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 AC073869.9-201ENST00000641610 120 ntBASIC-1.81□□□□□ -2.7
LINC00643Q86TS7 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 RNU6-1115P-201ENST00000362490 106 ntBASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 RNU6-1084P-201ENST00000362498 107 ntBASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 MIR613-201ENST00000385248 95 ntBASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 SNORA13-201ENST00000458790 133 ntBASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 AC023510.2-201ENST00000622162 746 ntBASIC-1.82□□□□□ -2.7
LINC00643Q86TS7 RNU6-740P-201ENST00000364734 105 ntBASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 SNORA24.1-201ENST00000384401 135 ntBASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 MT-TF-201ENST00000387314 71 ntBASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 RNU6-855P-201ENST00000410395 104 ntBASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 MTND1P14-201ENST00000427400 950 ntBASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 AL500527.2-201ENST00000454105 95 ntBASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 Y_RNA.638-201ENST00000459374 113 ntBASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC-1.83□□□□□ -2.7
LINC00643Q86TS7 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 RNU6-769P-201ENST00000384407 104 ntBASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 AC018865.2-201ENST00000423631 129 ntBASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 AF186996.7-201ENST00000492781 209 ntBASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 AC011352.1-201ENST00000512300 793 ntBASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 SNORA25.13-201ENST00000516395 103 ntBASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 MTND1P5-201ENST00000517906 940 ntBASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 AC137590.2-201ENST00000619709 240 ntBASIC-1.84□□□□□ -2.7
LINC00643Q86TS7 RNU6-502P-201ENST00000362419 108 ntBASIC-1.85□□□□□ -2.71
LINC00643Q86TS7 RNU6-1244P-201ENST00000363614 108 ntBASIC-1.85□□□□□ -2.71
LINC00643Q86TS7 snoU2-30.1-201ENST00000365012 70 ntBASIC-1.85□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 187.1 ms