Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 SNORA31.14-201ENST00000516728 116 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU7-172P-201ENST00000517125 64 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 AC090572.1-201ENST00000519251 160 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 AP000907.4-201ENST00000604143 237 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-462P-201ENST00000362659 105 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 RNU4-32P-201ENST00000363404 141 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 Y_RNA.465-201ENST00000384293 102 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 AC137499.1-201ENST00000427602 88 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 AC133104.1-201ENST00000429100 218 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 AC079781.2-201ENST00000446424 169 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-0.65□□□□□ -2.51
USF3Q68DE3 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC-0.65□□□□□ -2.51
USF3Q68DE3 AC078880.5-201ENST00000617845 421 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 MIR4320-201ENST00000636981 65 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 RNA5SP192-201ENST00000364404 120 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 Y_RNA.537-201ENST00000384626 109 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 MT-TY-201ENST00000387409 66 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 MIR802-201ENST00000390235 94 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 RNU2-54P-201ENST00000410299 190 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 AC090844.1-201ENST00000422019 156 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 MIR18B-201ENST00000454574 71 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 RNU7-62P-201ENST00000458856 62 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 RNU6-1102P-201ENST00000516149 96 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 RNU6-63P-201ENST00000516690 95 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 SNORA25.17-201ENST00000517184 124 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 FGF7P1-201ENST00000582820 288 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 uc_338.11-201ENST00000619132 160 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 MIR6738-201ENST00000619620 64 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 AC137590.2-201ENST00000619709 240 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 AL078596.1-201ENST00000624856 447 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 AC008873.1-201ENST00000625051 138 ntBASIC-0.65□□□□□ -2.51
USF3Q68DE3 RNU6-792P-201ENST00000363490 107 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 SNORD114-3-201ENST00000364969 75 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 RNU6-480P-201ENST00000384332 107 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 SNORD38C-201ENST00000384381 69 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 MIR1257-201ENST00000408490 117 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 AC018865.2-201ENST00000423631 129 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 AL365184.2-201ENST00000431139 435 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 AL353572.1-201ENST00000442490 417 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 AC109327.2-201ENST00000448339 378 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 RNU2-56P-201ENST00000516826 190 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC-0.66□□□□□ -2.51
USF3Q68DE3 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-0.66□□□□□ -2.51
USF3Q68DE3 AC091965.4-201ENST00000607691 587 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 AC244669.1-204ENST00000621564 178 ntBASIC-0.66□□□□□ -2.51
USF3Q68DE3 RNU6-1084P-201ENST00000362498 107 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 MTCO3P19-201ENST00000415864 321 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-0.66□□□□□ -2.52
USF3Q68DE3 RNU6-1028P-201ENST00000517164 93 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 AC123904.2-201ENST00000548059 300 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 MIR3152-201ENST00000579801 74 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 MIR548AR-201ENST00000582191 57 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 AC008608.1-201ENST00000603910 127 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 AC121334.2-201ENST00000605387 271 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-0.66□□□□□ -2.52
USF3Q68DE3 Y_RNA.46-201ENST00000362695 102 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 Y_RNA.100-201ENST00000363141 102 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 RNU5E-10P-201ENST00000363506 118 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 RNU4-1-201ENST00000363925 141 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 RNU4-36P-201ENST00000364294 144 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 RNU6-827P-201ENST00000365553 106 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 MIR1207-201ENST00000408249 87 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-0.67□□□□□ -2.52
USF3Q68DE3 AC243428.1-201ENST00000421099 264 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-0.67□□□□□ -2.52
USF3Q68DE3 MTCO2P6-201ENST00000463134 685 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 AC006380.1-201ENST00000603598 186 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 AC010205.1-201ENST00000616668 449 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 AC022306.2-201ENST00000617563 647 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 MIR6828-201ENST00000636181 60 ntBASIC-0.67□□□□□ -2.52
USF3Q68DE3 Y_RNA.376-201ENST00000365638 108 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 RNU6-116P-201ENST00000384042 109 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 SNORD28-201ENST00000384706 75 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.68□□□□□ -2.52
USF3Q68DE3 MTND1P14-201ENST00000427400 950 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.68□□□□□ -2.52
USF3Q68DE3 AC116353.2-201ENST00000505332 712 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 MTND1P8-201ENST00000571424 950 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 AC005776.1-201ENST00000603164 290 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 AL590491.3-201ENST00000610731 82 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 RMST_3.1-201ENST00000611651 109 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 AC016597.2-201ENST00000613256 341 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 SNORD28B-201ENST00000390993 75 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 RN7SKP19-201ENST00000516016 252 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 MIR4306-201ENST00000583390 91 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 AC091304.10-201ENST00000641554 121 ntBASIC-0.68□□□□□ -2.52
USF3Q68DE3 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 RNU6-541P-201ENST00000384709 110 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 RNY1P7-201ENST00000384743 110 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 MIR570-201ENST00000384917 97 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 MIR320B2-201ENST00000408479 138 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 AC046134.1-201ENST00000514454 666 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-0.69□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms