Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MIR4423-201ENST00000580922 80 ntBASIC1.86□□□□□ -2.11
USP41Q3LFD5 MIR4719-201ENST00000585233 84 ntBASIC1.86□□□□□ -2.11
USP41Q3LFD5 AL355297.3-201ENST00000604082 446 ntBASIC1.86□□□□□ -2.11
USP41Q3LFD5 U6.73-201ENST00000619194 103 ntBASIC1.86□□□□□ -2.11
USP41Q3LFD5 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
USP41Q3LFD5 RNU6-271P-201ENST00000363858 105 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 Y_RNA.183-201ENST00000363882 113 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 MIR873-201ENST00000401120 77 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 AL031003.1-201ENST00000404229 172 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 RNU2-7P-201ENST00000410794 178 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 RNA5SP100-201ENST00000410903 110 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 RNA5SP59-201ENST00000410922 110 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 RNU6-1199P-201ENST00000411249 104 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 AL390729.2-201ENST00000416137 156 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 AC245047.4-201ENST00000433189 144 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 AC005042.3-201ENST00000453230 174 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 AC010409.1-201ENST00000487382 476 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 AC108729.3-201ENST00000513484 108 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 RNA5SP20-201ENST00000515976 84 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 RNY3P15-201ENST00000516297 97 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 Y_RNA.676-201ENST00000516393 96 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.85□□□□□ -2.11
USP41Q3LFD5 AC136932.1-201ENST00000574771 208 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 MIR3122-201ENST00000577243 73 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.85□□□□□ -2.11
USP41Q3LFD5 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 MIR376A1-201ENST00000616574 68 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.85□□□□□ -2.11
USP41Q3LFD5 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
USP41Q3LFD5 MIR378A-201ENST00000362177 66 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 RNU6-112P-201ENST00000363599 104 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 Y_RNA.153-201ENST00000363615 91 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.84□□□□□ -2.11
USP41Q3LFD5 SNORD63-201ENST00000384262 68 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 MIR606-201ENST00000384851 96 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 EBAG9P1-201ENST00000418955 543 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 SUMO1P2-201ENST00000452524 304 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 AL163195.1-201ENST00000496941 348 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 HMGB3P17-201ENST00000504195 649 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 RNU7-172P-201ENST00000517125 64 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 AC024995.1-201ENST00000523014 93 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.84□□□□□ -2.11
USP41Q3LFD5 AC005828.6-201ENST00000606610 232 ntBASIC1.84□□□□□ -2.11
USP41Q3LFD5 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
USP41Q3LFD5 Y_RNA.152-201ENST00000363578 100 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 SNORD48-201ENST00000364953 64 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 RNU6-1160P-201ENST00000384546 104 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 MIR520A-201ENST00000384862 85 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 Y_RNA.602-201ENST00000410535 92 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.83□□□□□ -2.12
USP41Q3LFD5 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.83□□□□□ -2.12
USP41Q3LFD5 AC010655.3-201ENST00000478818 450 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 MRPS35P2-201ENST00000508242 191 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 RNU7-99P-201ENST00000516271 62 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.83□□□□□ -2.12
USP41Q3LFD5 MIR4419B-201ENST00000577260 68 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 MIR4300-201ENST00000581016 96 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.83□□□□□ -2.12
USP41Q3LFD5 U6.108-201ENST00000637764 58 ntBASIC1.83□□□□□ -2.12
USP41Q3LFD5 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.83□□□□□ -2.12
USP41Q3LFD5 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
USP41Q3LFD5 RNU1-22P-201ENST00000363334 158 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 Y_RNA.214-201ENST00000364201 112 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 Y_RNA.329-201ENST00000365209 107 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 RNU6-505P-201ENST00000384427 107 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
USP41Q3LFD5 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 ELOCP20-201ENST00000422460 345 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 AC069257.2-201ENST00000441819 155 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 AC073910.1-201ENST00000445047 438 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 RPS26P55-201ENST00000471178 356 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 AC097462.1-201ENST00000514125 324 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 SNORA70.12-201ENST00000516084 153 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 RNU6-436P-201ENST00000516171 114 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 SNORA31.17-201ENST00000516953 127 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 RNU7-128P-201ENST00000517247 62 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.82□□□□□ -2.12
USP41Q3LFD5 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.82□□□□□ -2.12
USP41Q3LFD5 AC073413.2-201ENST00000604332 360 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 AC007742.2-201ENST00000618226 398 ntBASIC1.82□□□□□ -2.12
USP41Q3LFD5 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.81□□□□□ -2.12
USP41Q3LFD5 RNU6-661P-201ENST00000362409 107 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 Y_RNA.105-201ENST00000363182 111 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 SNORD113-8-201ENST00000363497 74 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 RNU6-770P-201ENST00000363929 105 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 Y_RNA.286-201ENST00000364813 102 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 RNU6-296P-201ENST00000384608 107 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 AC009310.1-201ENST00000414414 451 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 BTF3P4-201ENST00000418852 495 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.81□□□□□ -2.12
USP41Q3LFD5 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.81□□□□□ -2.12
USP41Q3LFD5 SEPT14P8-201ENST00000508026 178 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 RNU6-1053P-201ENST00000515930 101 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.81□□□□□ -2.12
USP41Q3LFD5 AC022254.1-201ENST00000567857 235 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 snoU13.31-201ENST00000607291 104 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 AC127459.3-201ENST00000624328 466 ntBASIC1.81□□□□□ -2.12
USP41Q3LFD5 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
USP41Q3LFD5 Y_RNA.19-201ENST00000362462 99 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms