Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNORA63-201ENST00000363450 132 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.191-201ENST00000363972 113 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 RNU6-296P-201ENST00000384608 107 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 RNU6-1199P-201ENST00000411249 104 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 AL139156.1-201ENST00000412785 841 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 RNU7-99P-201ENST00000516271 62 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 RNA5SP220-201ENST00000516298 104 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 RNU7-128P-201ENST00000517247 62 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.87□□□□□ -2.11
COL28A1Q2UY09 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.87□□□□□ -2.11
COL28A1Q2UY09 AP003072.1-201ENST00000531740 145 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 AC084364.2-201ENST00000546924 395 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 MIR4299-201ENST00000577899 72 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 MIR4303-201ENST00000581299 66 ntBASIC1.87□□□□□ -2.11
COL28A1Q2UY09 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
COL28A1Q2UY09 SNORD114-26-201ENST00000363543 72 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.183-201ENST00000363882 113 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 RNU6-450P-201ENST00000364654 107 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 RNU6-1175P-201ENST00000365200 107 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.446-201ENST00000384178 104 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 MIR520A-201ENST00000384862 85 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 AL627390.1-201ENST00000396055 340 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.86□□□□□ -2.11
COL28A1Q2UY09 AC005042.3-201ENST00000453230 174 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 AC010409.1-201ENST00000487382 476 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 SNORA70.12-201ENST00000516084 153 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 RNU1-142P-201ENST00000516682 145 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 AC113195.1-201ENST00000579952 141 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 MIR4438-201ENST00000585271 93 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 AC012493.3-201ENST00000604494 112 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.812-201ENST00000610788 101 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.784-201ENST00000613803 101 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.787-201ENST00000616522 101 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.780-201ENST00000617336 101 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.801-201ENST00000619005 101 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.86□□□□□ -2.11
COL28A1Q2UY09 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.86□□□□□ -2.11
COL28A1Q2UY09 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
COL28A1Q2UY09 SNORA33-201ENST00000363664 130 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 RNA5SP160-201ENST00000364866 120 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.327-201ENST00000365201 102 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
COL28A1Q2UY09 RNU11-5P-201ENST00000391216 129 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 RNA5SP467-201ENST00000391274 118 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 RNU6-985P-201ENST00000410182 104 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 AC003989.2-201ENST00000440224 169 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 RPL23AP6-201ENST00000446637 472 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 RPS27P22-201ENST00000478056 241 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 AC097462.1-201ENST00000514125 324 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 RNA5SP20-201ENST00000515976 84 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.85□□□□□ -2.11
COL28A1Q2UY09 MIR4713-201ENST00000582691 75 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 MIR4452-201ENST00000583004 71 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.85□□□□□ -2.11
COL28A1Q2UY09 AL096840.1-201ENST00000603287 93 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 RAC1P9-201ENST00000604990 392 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 MIR8081-201ENST00000611533 95 ntBASIC1.85□□□□□ -2.11
COL28A1Q2UY09 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
COL28A1Q2UY09 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
COL28A1Q2UY09 RNU1-22P-201ENST00000363334 158 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 AL031003.1-201ENST00000404229 172 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 EBAG9P1-201ENST00000418955 543 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 RPS26P55-201ENST00000471178 356 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.84□□□□□ -2.11
COL28A1Q2UY09 MRPS17P9-201ENST00000511924 393 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 RNU6-764P-201ENST00000516396 105 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 RNA5SP481-201ENST00000516814 122 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.84□□□□□ -2.11
COL28A1Q2UY09 AC011373.1-201ENST00000607270 237 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 AC084768.2-201ENST00000622736 221 ntBASIC1.84□□□□□ -2.11
COL28A1Q2UY09 AC245060.5-201ENST00000610778 3293 ntBASIC1.84□□□□□ -2.12
COL28A1Q2UY09 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
COL28A1Q2UY09 AL391987.6-201ENST00000305671 199 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.143-201ENST00000363520 106 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.527-201ENST00000384573 102 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 RNA5SP323-201ENST00000391094 133 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 AL590004.1-201ENST00000405321 300 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.83□□□□□ -2.12
COL28A1Q2UY09 HSPE1P13-201ENST00000451143 297 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 RNU7-95P-201ENST00000459222 64 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 RNU7-94P-201ENST00000459576 63 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 RNU6-155P-201ENST00000516347 100 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 RNU6-1137P-201ENST00000517073 99 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 RNU6-897P-201ENST00000517135 105 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 AC023157.2-201ENST00000540596 141 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 AC136932.1-201ENST00000574771 208 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 AC006504.6-201ENST00000590142 199 ntBASIC1.83□□□□□ -2.12
COL28A1Q2UY09 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.83□□□□□ -2.12
COL28A1Q2UY09 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
COL28A1Q2UY09 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.82□□□□□ -2.12
COL28A1Q2UY09 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.82□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.152-201ENST00000363578 100 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 RNU6-117P-201ENST00000365415 107 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 Y_RNA.374-201ENST00000365606 101 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 RNU6-937P-201ENST00000384325 106 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 SNORD115-46-201ENST00000390982 71 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 RNU2-20P-201ENST00000410425 191 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 RNU2-61P-201ENST00000411069 191 ntBASIC1.82□□□□□ -2.12
COL28A1Q2UY09 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.82□□□□□ -2.12
COL28A1Q2UY09 RNA5SP57-201ENST00000459463 123 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms