Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MIR5582-201ENST00000579697 68 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX4Q06945 UCA1.1-201ENST00000620952 75 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SOX4Q06945 AC002064.3-201ENST00000623448 346 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 MIR7153-201ENST00000637758 57 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX4Q06945 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
SOX4Q06945 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SOX4Q06945 Y_RNA.116-201ENST00000363292 103 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 RNU6-32P-201ENST00000383948 107 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 RNU6-13P-201ENST00000384248 107 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 RNU6-12P-201ENST00000384604 107 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 RNU6-41P-201ENST00000384741 107 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 MIR634-201ENST00000385208 97 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
SOX4Q06945 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX4Q06945 AL513477.1-202ENST00000417061 214 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 AF228730.3-201ENST00000436691 102 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 MTCO1P44-201ENST00000441935 243 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 AL135938.1-201ENST00000443141 297 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 AC006483.1-201ENST00000487308 313 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 RNA5SP490-201ENST00000517141 136 ntBASIC3.2□□□□□ -1.9
SOX4Q06945 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX4Q06945 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
SOX4Q06945 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.19□□□□□ -1.9
SOX4Q06945 RNU6-504P-201ENST00000516568 104 ntBASIC3.19□□□□□ -1.9
SOX4Q06945 IGKV1-22-201ENST00000524313 326 ntBASIC3.19□□□□□ -1.9
SOX4Q06945 MIR3129-201ENST00000581095 76 ntBASIC3.19□□□□□ -1.9
SOX4Q06945 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.19□□□□□ -1.9
SOX4Q06945 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.19□□□□□ -1.9
SOX4Q06945 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.19□□□□□ -1.9
SOX4Q06945 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX4Q06945 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX4Q06945 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SOX4Q06945 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
SOX4Q06945 AL355596.1-201ENST00000565399 3996 ntBASIC3.19□□□□□ -1.9
SOX4Q06945 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SOX4Q06945 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
SOX4Q06945 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.18□□□□□ -1.9
SOX4Q06945 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.18□□□□□ -1.9
SOX4Q06945 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.18□□□□□ -1.9
SOX4Q06945 SNORA14A-201ENST00000364773 135 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 SNORA1-201ENST00000384107 130 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 MIR1263-201ENST00000408324 86 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 Y_RNA.621-201ENST00000411065 96 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 RPL32P35-201ENST00000415214 394 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 TRIAP1P1-201ENST00000427062 225 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 AC022018.1-201ENST00000430685 241 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 AC018634.1-201ENST00000437554 401 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.18□□□□□ -1.9
SOX4Q06945 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.18□□□□□ -1.9
SOX4Q06945 SNORA59A-201ENST00000459326 152 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 RPS29P24-201ENST00000486345 171 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 RNU6-1096P-201ENST00000517089 102 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 SCARNA11.3-201ENST00000517276 130 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 PRELID2P1-201ENST00000552837 301 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.18□□□□□ -1.9
SOX4Q06945 uc_338.28-201ENST00000612082 187 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 U6.73-201ENST00000619194 103 ntBASIC3.18□□□□□ -1.9
SOX4Q06945 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SOX4Q06945 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SOX4Q06945 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.18□□□□□ -1.9
SOX4Q06945 AL035425.3-201ENST00000564206 4996 ntBASIC3.17□□□□□ -1.9
SOX4Q06945 MAPK10-362ENST00000641864 4484 ntBASIC3.17□□□□□ -1.9
SOX4Q06945 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.17□□□□□ -1.9
SOX4Q06945 RNU6-546P-201ENST00000383991 107 ntBASIC3.17□□□□□ -1.9
SOX4Q06945 MIR1253-201ENST00000408273 105 ntBASIC3.17□□□□□ -1.9
SOX4Q06945 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.17□□□□□ -1.9
SOX4Q06945 NDUFA4P2-201ENST00000489989 244 ntBASIC3.17□□□□□ -1.9
SOX4Q06945 AC110079.1-202ENST00000635213 138 ntBASIC3.17□□□□□ -1.9
SOX4Q06945 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.17□□□□□ -1.9
SOX4Q06945 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SOX4Q06945 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SOX4Q06945 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
SOX4Q06945 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SOX4Q06945 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SOX4Q06945 MIR520G-201ENST00000385064 90 ntBASIC3.16□□□□□ -1.9
SOX4Q06945 RNU2-32P-201ENST00000411193 191 ntBASIC3.16□□□□□ -1.9
SOX4Q06945 AC091826.1-201ENST00000514065 313 ntBASIC3.16□□□□□ -1.9
SOX4Q06945 AC096725.1-201ENST00000514266 313 ntBASIC3.16□□□□□ -1.9
SOX4Q06945 SCGB1D5P-201ENST00000515134 247 ntBASIC3.16□□□□□ -1.9
SOX4Q06945 SNORA4.4-201ENST00000515921 135 ntBASIC3.16□□□□□ -1.9
SOX4Q06945 RN7SKP132-201ENST00000516001 208 ntBASIC3.16□□□□□ -1.9
SOX4Q06945 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.16□□□□□ -1.9
SOX4Q06945 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.16□□□□□ -1.9
SOX4Q06945 U2.20-201ENST00000613956 192 ntBASIC3.16□□□□□ -1.9
SOX4Q06945 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.16□□□□□ -1.9
SOX4Q06945 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SOX4Q06945 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.9
SOX4Q06945 AL021368.2-201ENST00000606125 5352 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 RNU6-743P-201ENST00000364151 106 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 RNU6-106P-201ENST00000384405 107 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 Y_RNA.510-201ENST00000384511 114 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 Y_RNA.528-201ENST00000384575 108 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 MIR218-1-201ENST00000384999 110 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 RNU6-1328P-201ENST00000410938 106 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 AC092185.1-201ENST00000491371 97 ntBASIC3.15□□□□□ -1.91
SOX4Q06945 MRPS17P9-201ENST00000511924 393 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms