Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RNU6-407P-201ENST00000365280 104 ntBASIC1.09□□□□□ -2.23
LIM2P55344 Y_RNA.390-201ENST00000383932 102 ntBASIC1.09□□□□□ -2.23
LIM2P55344 RNU6-376P-201ENST00000384731 106 ntBASIC1.09□□□□□ -2.23
LIM2P55344 AL135790.2-201ENST00000437701 267 ntBASIC1.09□□□□□ -2.23
LIM2P55344 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.09□□□□□ -2.23
LIM2P55344 RNU7-152P-201ENST00000458982 64 ntBASIC1.09□□□□□ -2.23
LIM2P55344 RNU6-1053P-201ENST00000515930 101 ntBASIC1.09□□□□□ -2.23
LIM2P55344 RNU2-56P-201ENST00000516826 190 ntBASIC1.09□□□□□ -2.23
LIM2P55344 AC027419.1-201ENST00000522976 328 ntBASIC1.09□□□□□ -2.23
LIM2P55344 MIR3664-201ENST00000579074 99 ntBASIC1.09□□□□□ -2.23
LIM2P55344 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
LIM2P55344 AL513534.2-201ENST00000603836 250 ntBASIC1.09□□□□□ -2.23
LIM2P55344 AL359821.1-201ENST00000605519 182 ntBASIC1.09□□□□□ -2.23
LIM2P55344 AL132765.2-201ENST00000610812 351 ntBASIC1.09□□□□□ -2.23
LIM2P55344 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.09□□□□□ -2.23
LIM2P55344 RNY1P10-201ENST00000363268 113 ntBASIC1.08□□□□□ -2.24
LIM2P55344 SNORA72.1-201ENST00000363485 129 ntBASIC1.08□□□□□ -2.24
LIM2P55344 Y_RNA.230-201ENST00000364348 109 ntBASIC1.08□□□□□ -2.24
LIM2P55344 Y_RNA.259-201ENST00000364619 101 ntBASIC1.08□□□□□ -2.24
LIM2P55344 RNU6-1040P-201ENST00000383974 107 ntBASIC1.08□□□□□ -2.24
LIM2P55344 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
LIM2P55344 STAG3L5P-204ENST00000443759 179 ntBASIC1.08□□□□□ -2.24
LIM2P55344 MTCO3P10-201ENST00000455912 772 ntBASIC1.08□□□□□ -2.24
LIM2P55344 RPL30P15-201ENST00000457129 321 ntBASIC1.08□□□□□ -2.24
LIM2P55344 RNU6-1012P-201ENST00000516606 109 ntBASIC1.08□□□□□ -2.24
LIM2P55344 AC006380.1-201ENST00000603598 186 ntBASIC1.08□□□□□ -2.24
LIM2P55344 AL021879.1-201ENST00000611756 288 ntBASIC1.08□□□□□ -2.24
LIM2P55344 AL138825.1-201ENST00000618587 192 ntBASIC1.08□□□□□ -2.24
LIM2P55344 U2.1-201ENST00000618978 145 ntBASIC1.08□□□□□ -2.24
LIM2P55344 SNORD3E-202ENST00000627253 216 ntBASIC1.08□□□□□ -2.24
LIM2P55344 Y_RNA.27-201ENST00000362540 103 ntBASIC1.07□□□□□ -2.24
LIM2P55344 SNORD115-30-201ENST00000364117 82 ntBASIC1.07□□□□□ -2.24
LIM2P55344 RNU4-76P-201ENST00000364509 141 ntBASIC1.07□□□□□ -2.24
LIM2P55344 Y_RNA.265-201ENST00000364677 108 ntBASIC1.07□□□□□ -2.24
LIM2P55344 RNU6-424P-201ENST00000384367 105 ntBASIC1.07□□□□□ -2.24
LIM2P55344 MIR559-201ENST00000385188 96 ntBASIC1.07□□□□□ -2.24
LIM2P55344 MIR653-201ENST00000385279 96 ntBASIC1.07□□□□□ -2.24
LIM2P55344 MIR1285-1-201ENST00000408593 84 ntBASIC1.07□□□□□ -2.24
LIM2P55344 RNU2-54P-201ENST00000410299 190 ntBASIC1.07□□□□□ -2.24
LIM2P55344 Y_RNA.605-201ENST00000410577 105 ntBASIC1.07□□□□□ -2.24
LIM2P55344 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.07□□□□□ -2.24
LIM2P55344 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.07□□□□□ -2.24
LIM2P55344 MTCO2P27-201ENST00000420740 428 ntBASIC1.07□□□□□ -2.24
LIM2P55344 AL591704.2-201ENST00000421658 181 ntBASIC1.07□□□□□ -2.24
LIM2P55344 SDAD1P3-201ENST00000427380 333 ntBASIC1.07□□□□□ -2.24
LIM2P55344 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.07□□□□□ -2.24
LIM2P55344 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.07□□□□□ -2.24
LIM2P55344 AC091021.1-201ENST00000468051 388 ntBASIC1.07□□□□□ -2.24
LIM2P55344 OR9P1P-201ENST00000496431 281 ntBASIC1.07□□□□□ -2.24
LIM2P55344 RNU6-408P-201ENST00000515910 100 ntBASIC1.07□□□□□ -2.24
LIM2P55344 AL160236.1-201ENST00000556317 195 ntBASIC1.07□□□□□ -2.24
LIM2P55344 AC008269.2-201ENST00000561915 1105 ntBASIC1.07□□□□□ -2.24
LIM2P55344 AC005730.3-201ENST00000583067 366 ntBASIC1.07□□□□□ -2.24
LIM2P55344 AC138305.3-201ENST00000624988 240 ntBASIC1.07□□□□□ -2.24
LIM2P55344 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.07□□□□□ -2.24
LIM2P55344 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
LIM2P55344 MIR26B-201ENST00000362251 77 ntBASIC1.06□□□□□ -2.24
LIM2P55344 RNU6-199P-201ENST00000362954 107 ntBASIC1.06□□□□□ -2.24
LIM2P55344 RNU6-53P-201ENST00000365367 106 ntBASIC1.06□□□□□ -2.24
LIM2P55344 MIR628-201ENST00000385229 95 ntBASIC1.06□□□□□ -2.24
LIM2P55344 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.06□□□□□ -2.24
LIM2P55344 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.06□□□□□ -2.24
LIM2P55344 AC105758.1-201ENST00000506038 399 ntBASIC1.06□□□□□ -2.24
LIM2P55344 Y_RNA.718-201ENST00000517110 102 ntBASIC1.06□□□□□ -2.24
LIM2P55344 SUMO2P16-201ENST00000519475 264 ntBASIC1.06□□□□□ -2.24
LIM2P55344 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.06□□□□□ -2.24
LIM2P55344 VN1R91P-201ENST00000594377 169 ntBASIC1.06□□□□□ -2.24
LIM2P55344 AC004467.1-201ENST00000615678 330 ntBASIC1.06□□□□□ -2.24
LIM2P55344 AC240442.1-201ENST00000616055 283 ntBASIC1.06□□□□□ -2.24
LIM2P55344 MIR8065-201ENST00000620577 100 ntBASIC1.06□□□□□ -2.24
LIM2P55344 MIR1302-1-201ENST00000637932 143 ntBASIC1.06□□□□□ -2.24
LIM2P55344 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.06□□□□□ -2.24
LIM2P55344 SNORA1B-201ENST00000362535 133 ntBASIC1.05□□□□□ -2.24
LIM2P55344 Y_RNA.187-201ENST00000363918 113 ntBASIC1.05□□□□□ -2.24
LIM2P55344 Y_RNA.263-201ENST00000364659 114 ntBASIC1.05□□□□□ -2.24
LIM2P55344 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.05□□□□□ -2.24
LIM2P55344 RNU6-505P-201ENST00000384427 107 ntBASIC1.05□□□□□ -2.24
LIM2P55344 SNORD116-29-201ENST00000384516 83 ntBASIC1.05□□□□□ -2.24
LIM2P55344 RNU6-321P-201ENST00000410912 106 ntBASIC1.05□□□□□ -2.24
LIM2P55344 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.05□□□□□ -2.24
LIM2P55344 U8.19-201ENST00000459095 133 ntBASIC1.05□□□□□ -2.24
LIM2P55344 AC005840.1-201ENST00000498412 377 ntBASIC1.05□□□□□ -2.24
LIM2P55344 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.05□□□□□ -2.24
LIM2P55344 AC090049.2-201ENST00000550377 109 ntBASIC1.05□□□□□ -2.24
LIM2P55344 CYP3A52P-201ENST00000563326 91 ntBASIC1.05□□□□□ -2.24
LIM2P55344 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.05□□□□□ -2.24
LIM2P55344 Y_RNA.124-201ENST00000363339 93 ntBASIC1.04□□□□□ -2.24
LIM2P55344 RNU6-961P-201ENST00000363893 105 ntBASIC1.04□□□□□ -2.24
LIM2P55344 RNU6-392P-201ENST00000364926 101 ntBASIC1.04□□□□□ -2.24
LIM2P55344 Y_RNA.314-201ENST00000365114 102 ntBASIC1.04□□□□□ -2.24
LIM2P55344 Y_RNA.428-201ENST00000384078 102 ntBASIC1.04□□□□□ -2.24
LIM2P55344 RNU6-1009P-201ENST00000390996 107 ntBASIC1.04□□□□□ -2.24
LIM2P55344 AL162725.1-201ENST00000435405 301 ntBASIC1.04□□□□□ -2.24
LIM2P55344 AC093019.1-201ENST00000443135 252 ntBASIC1.04□□□□□ -2.24
LIM2P55344 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.04□□□□□ -2.24
LIM2P55344 TRMT112P2-201ENST00000512910 132 ntBASIC1.04□□□□□ -2.24
LIM2P55344 RNU6-322P-201ENST00000516010 103 ntBASIC1.04□□□□□ -2.24
LIM2P55344 RNU6-120P-201ENST00000516077 103 ntBASIC1.04□□□□□ -2.24
LIM2P55344 RNA5SP168-201ENST00000516642 112 ntBASIC1.04□□□□□ -2.24
LIM2P55344 RN7SKP88-201ENST00000516847 250 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms