Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 AC109329.2-201ENST00000519658 482 ntBASIC3.33□□□□□ -1.88
USP11P51784 MIR6852-201ENST00000621699 66 ntBASIC3.33□□□□□ -1.88
USP11P51784 AC090517.3-201ENST00000625170 141 ntBASIC3.33□□□□□ -1.88
USP11P51784 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.33□□□□□ -1.88
USP11P51784 GABRG2-229ENST00000641017 3628 ntBASIC3.32□□□□□ -1.88
USP11P51784 MIR450A1-201ENST00000362262 91 ntBASIC3.32□□□□□ -1.88
USP11P51784 Y_RNA.203-201ENST00000364106 102 ntBASIC3.32□□□□□ -1.88
USP11P51784 RNU6-647P-201ENST00000364243 107 ntBASIC3.32□□□□□ -1.88
USP11P51784 SNORA9.2-201ENST00000365361 133 ntBASIC3.32□□□□□ -1.88
USP11P51784 RNU6-418P-201ENST00000384035 107 ntBASIC3.32□□□□□ -1.88
USP11P51784 RNU6-1274P-201ENST00000384557 107 ntBASIC3.32□□□□□ -1.88
USP11P51784 MIR548A1-201ENST00000385041 97 ntBASIC3.32□□□□□ -1.88
USP11P51784 MIR1294-201ENST00000408503 142 ntBASIC3.32□□□□□ -1.88
USP11P51784 EEF1A1P41-201ENST00000414667 207 ntBASIC3.32□□□□□ -1.88
USP11P51784 AC009414.1-201ENST00000427200 443 ntBASIC3.32□□□□□ -1.88
USP11P51784 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.32□□□□□ -1.88
USP11P51784 AC080013.2-201ENST00000460866 323 ntBASIC3.32□□□□□ -1.88
USP11P51784 IGKV1-22-201ENST00000524313 326 ntBASIC3.32□□□□□ -1.88
USP11P51784 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.32□□□□□ -1.88
USP11P51784 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.32□□□□□ -1.88
USP11P51784 AL121890.5-201ENST00000620848 304 ntBASIC3.32□□□□□ -1.88
USP11P51784 AC006386.2-201ENST00000624491 75 ntBASIC3.32□□□□□ -1.88
USP11P51784 AC012005.1-201ENST00000624575 75 ntBASIC3.32□□□□□ -1.88
USP11P51784 AC110079.1-202ENST00000635213 138 ntBASIC3.32□□□□□ -1.88
USP11P51784 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP11P51784 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP11P51784 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP11P51784 Y_RNA.52-201ENST00000362760 96 ntBASIC3.31□□□□□ -1.88
USP11P51784 RNU4-13P-201ENST00000364019 141 ntBASIC3.31□□□□□ -1.88
USP11P51784 Y_RNA.796-201ENST00000364268 102 ntBASIC3.31□□□□□ -1.88
USP11P51784 Y_RNA.799-201ENST00000364992 102 ntBASIC3.31□□□□□ -1.88
USP11P51784 RNU6-234P-201ENST00000365229 104 ntBASIC3.31□□□□□ -1.88
USP11P51784 Y_RNA.495-201ENST00000384435 112 ntBASIC3.31□□□□□ -1.88
USP11P51784 Y_RNA.500-201ENST00000384466 111 ntBASIC3.31□□□□□ -1.88
USP11P51784 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.31□□□□□ -1.88
USP11P51784 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.31□□□□□ -1.88
USP11P51784 RPL30P4-201ENST00000429309 333 ntBASIC3.31□□□□□ -1.88
USP11P51784 AL139132.1-201ENST00000431587 344 ntBASIC3.31□□□□□ -1.88
USP11P51784 RPS4XP11-201ENST00000446897 772 ntBASIC3.31□□□□□ -1.88
USP11P51784 SCGB1D5P-201ENST00000515134 247 ntBASIC3.31□□□□□ -1.88
USP11P51784 Y_RNA.694-201ENST00000516677 117 ntBASIC3.31□□□□□ -1.88
USP11P51784 MIR3117-201ENST00000584034 78 ntBASIC3.31□□□□□ -1.88
USP11P51784 MIR4298-201ENST00000584380 73 ntBASIC3.31□□□□□ -1.88
USP11P51784 UCA1.1-201ENST00000620952 75 ntBASIC3.31□□□□□ -1.88
USP11P51784 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP11P51784 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP11P51784 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USP11P51784 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
USP11P51784 RNU6-1209P-201ENST00000363655 107 ntBASIC3.3□□□□□ -1.88
USP11P51784 SNORD31B-201ENST00000364977 69 ntBASIC3.3□□□□□ -1.88
USP11P51784 SNORD18B-201ENST00000365659 72 ntBASIC3.3□□□□□ -1.88
USP11P51784 AC244505.4-201ENST00000434905 287 ntBASIC3.3□□□□□ -1.88
USP11P51784 MTCO1P44-201ENST00000441935 243 ntBASIC3.3□□□□□ -1.88
USP11P51784 SSXP5-201ENST00000443473 287 ntBASIC3.3□□□□□ -1.88
USP11P51784 Y_RNA.649-201ENST00000459077 103 ntBASIC3.3□□□□□ -1.88
USP11P51784 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.3□□□□□ -1.88
USP11P51784 MIR4513-201ENST00000581077 86 ntBASIC3.3□□□□□ -1.88
USP11P51784 AC025166.1-201ENST00000612411 163 ntBASIC3.3□□□□□ -1.88
USP11P51784 RNU1-72P-201ENST00000362976 153 ntBASIC3.29□□□□□ -1.88
USP11P51784 RNA5SP139-201ENST00000364340 117 ntBASIC3.29□□□□□ -1.88
USP11P51784 Y_RNA.486-201ENST00000384398 107 ntBASIC3.29□□□□□ -1.88
USP11P51784 Y_RNA.510-201ENST00000384511 114 ntBASIC3.29□□□□□ -1.88
USP11P51784 MIR891A-201ENST00000401237 79 ntBASIC3.29□□□□□ -1.88
USP11P51784 RNA5SP344-201ENST00000411081 104 ntBASIC3.29□□□□□ -1.88
USP11P51784 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.29□□□□□ -1.88
USP11P51784 RNU6-948P-201ENST00000516374 107 ntBASIC3.29□□□□□ -1.88
USP11P51784 AC007751.1-201ENST00000529260 376 ntBASIC3.29□□□□□ -1.88
USP11P51784 AL022345.2-201ENST00000606307 135 ntBASIC3.29□□□□□ -1.88
USP11P51784 AC002064.3-201ENST00000623448 346 ntBASIC3.29□□□□□ -1.88
USP11P51784 AC006435.5-201ENST00000624486 112 ntBASIC3.29□□□□□ -1.88
USP11P51784 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
USP11P51784 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.29□□□□□ -1.88
USP11P51784 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
USP11P51784 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.29□□□□□ -1.88
USP11P51784 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.28□□□□□ -1.88
USP11P51784 MTND5P18-201ENST00000445624 1801 ntBASIC3.28□□□□□ -1.88
USP11P51784 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP11P51784 RNU1-22P-201ENST00000363334 158 ntBASIC3.28□□□□□ -1.88
USP11P51784 RNU6-880P-201ENST00000384526 107 ntBASIC3.28□□□□□ -1.88
USP11P51784 MIR562-201ENST00000384894 95 ntBASIC3.28□□□□□ -1.88
USP11P51784 RPS27P22-201ENST00000478056 241 ntBASIC3.28□□□□□ -1.88
USP11P51784 MRPS36P2-201ENST00000512569 299 ntBASIC3.28□□□□□ -1.88
USP11P51784 RNU7-149P-201ENST00000516739 59 ntBASIC3.28□□□□□ -1.88
USP11P51784 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.28□□□□□ -1.88
USP11P51784 AC103810.1-201ENST00000579873 453 ntBASIC3.28□□□□□ -1.88
USP11P51784 AC105245.1-201ENST00000581934 244 ntBASIC3.28□□□□□ -1.88
USP11P51784 uc_338.28-201ENST00000612082 187 ntBASIC3.28□□□□□ -1.88
USP11P51784 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP11P51784 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP11P51784 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
USP11P51784 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
USP11P51784 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP11P51784 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP11P51784 Y_RNA.66-201ENST00000362862 102 ntBASIC3.27□□□□□ -1.89
USP11P51784 Y_RNA.116-201ENST00000363292 103 ntBASIC3.27□□□□□ -1.89
USP11P51784 MIR624-201ENST00000385217 97 ntBASIC3.27□□□□□ -1.89
USP11P51784 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.27□□□□□ -1.89
USP11P51784 AC063976.3-201ENST00000426849 329 ntBASIC3.27□□□□□ -1.89
USP11P51784 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.27□□□□□ -1.89
USP11P51784 UBE2DNL-203ENST00000474922 222 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms