Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC037487.3-201ENST00000606668 112 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 U6.108-201ENST00000637764 58 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 AC068700.1-201ENST00000565862 3754 ntBASIC1.78□□□□□ -2.13
HOXA1P49639 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
HOXA1P49639 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.77□□□□□ -2.13
HOXA1P49639 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.77□□□□□ -2.13
HOXA1P49639 Y_RNA.44-201ENST00000362676 108 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 RNU6-379P-201ENST00000363813 104 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 RNU6-801P-201ENST00000364087 105 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 RNU1-96P-201ENST00000364163 162 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 Y_RNA.510-201ENST00000384511 114 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 MIR29C-201ENST00000385231 88 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 RNA5SP511-201ENST00000410487 115 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 AL353689.1-201ENST00000438895 199 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.77□□□□□ -2.13
HOXA1P49639 AC097462.1-201ENST00000514125 324 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 RNU2-19P-201ENST00000517288 84 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 AC073413.2-201ENST00000604332 360 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 AC090425.1-201ENST00000610007 140 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 U6.73-201ENST00000619194 103 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 AC009487.4-201ENST00000624969 3585 ntBASIC1.77□□□□□ -2.13
HOXA1P49639 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.76□□□□□ -2.13
HOXA1P49639 AL136360.1-201ENST00000503377 1900 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 Y_RNA.65-201ENST00000362846 100 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 Y_RNA.76-201ENST00000362931 109 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 Y_RNA.341-201ENST00000365341 102 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 Y_RNA.416-201ENST00000384014 113 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 RNU6-1289P-201ENST00000384431 106 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 RNU6-763P-201ENST00000390865 106 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 RNA5SP501-201ENST00000410990 112 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 EBAG9P1-201ENST00000418955 543 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 HMGN2P19-201ENST00000425149 265 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.76□□□□□ -2.13
HOXA1P49639 U8.19-201ENST00000459095 133 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 RNU6-388P-201ENST00000517012 105 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 RNU6-389P-201ENST00000517048 105 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 RNU7-172P-201ENST00000517125 64 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 RNU6-111P-201ENST00000517179 105 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 MIR4287-201ENST00000579398 78 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 AC007229.1-201ENST00000590455 412 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.76□□□□□ -2.13
HOXA1P49639 AC004832.4-201ENST00000608952 331 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 AC009831.4-201ENST00000620744 325 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 AC078938.1-201ENST00000620993 318 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.76□□□□□ -2.13
HOXA1P49639 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HOXA1P49639 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HOXA1P49639 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
HOXA1P49639 RNA5SP276-201ENST00000362580 94 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 Y_RNA.269-201ENST00000364685 89 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 Y_RNA.275-201ENST00000364726 110 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 Y_RNA.310-201ENST00000365063 113 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 RNU6-117P-201ENST00000365415 107 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 RNU6-338P-201ENST00000383888 105 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 MIR221-201ENST00000385135 110 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 RNA5SP450-201ENST00000411206 102 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 AL135786.1-201ENST00000415892 214 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 BTF3P11-201ENST00000426582 477 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 AL606517.2-201ENST00000442855 241 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 AC108938.1-201ENST00000451204 136 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 RPS20P10-201ENST00000451209 253 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 Y_RNA.637-201ENST00000459424 114 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 SNORD116-28-201ENST00000516123 91 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 SNORA27.4-201ENST00000516650 95 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.75□□□□□ -2.13
HOXA1P49639 AL137100.2-201ENST00000555786 315 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 AC078899.2-201ENST00000595282 212 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 AL008718.3-201ENST00000610217 321 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 AL353149.1-201ENST00000610667 244 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 snoU18.1-201ENST00000629629 71 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.75□□□□□ -2.13
HOXA1P49639 AP006437.1-201ENST00000641440 3685 ntBASIC1.75□□□□□ -2.13
HOXA1P49639 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
HOXA1P49639 RNU6-271P-201ENST00000363858 105 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 Y_RNA.217-201ENST00000364214 105 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 RNA5SP160-201ENST00000364866 120 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 Y_RNA.352-201ENST00000365439 102 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 SNORA8-201ENST00000384574 139 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 RNU6-376P-201ENST00000384731 106 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 RNA5SP323-201ENST00000391094 133 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 MTCO2P33-201ENST00000402100 465 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 RNA5SP489-201ENST00000410986 109 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 AC018634.1-201ENST00000437554 401 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 Y_RNA.641-201ENST00000459414 105 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 AL163195.1-201ENST00000496941 348 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 SNORA70.12-201ENST00000516084 153 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 RNA5SP281-201ENST00000516504 135 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 AC015720.1-201ENST00000565251 277 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 MIR5002-201ENST00000584713 97 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 AC068647.2-201ENST00000637380 353 ntBASIC1.74□□□□□ -2.13
HOXA1P49639 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
HOXA1P49639 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
HOXA1P49639 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
HOXA1P49639 RNU6-1272P-201ENST00000362776 107 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 Y_RNA.111-201ENST00000363248 100 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 SNORA20.1-201ENST00000364790 130 ntBASIC1.73□□□□□ -2.13
HOXA1P49639 U8.7-201ENST00000364940 136 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 175.8 ms