Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MIR6788-201ENST00000618842 66 ntBASIC0.84□□□□□ -2.27
RFX3P48380 MIR6734-201ENST00000621166 68 ntBASIC0.84□□□□□ -2.27
RFX3P48380 Y_RNA.124-201ENST00000363339 93 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RNU6-879P-201ENST00000364328 108 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RNU4-40P-201ENST00000364351 143 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RNU6-407P-201ENST00000365280 104 ntBASIC0.83□□□□□ -2.28
RFX3P48380 Y_RNA.482-201ENST00000384377 111 ntBASIC0.83□□□□□ -2.28
RFX3P48380 Y_RNA.557-201ENST00000384680 107 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RNU6-376P-201ENST00000384731 106 ntBASIC0.83□□□□□ -2.28
RFX3P48380 MIR520E-201ENST00000384867 87 ntBASIC0.83□□□□□ -2.28
RFX3P48380 MIR532-201ENST00000385025 91 ntBASIC0.83□□□□□ -2.28
RFX3P48380 MIR520G-201ENST00000385064 90 ntBASIC0.83□□□□□ -2.28
RFX3P48380 SNORD41-201ENST00000386967 70 ntBASIC0.83□□□□□ -2.28
RFX3P48380 MIR873-201ENST00000401120 77 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RNA5SP475-201ENST00000410568 110 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.83□□□□□ -2.28
RFX3P48380 AL589823.1-201ENST00000429577 183 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RPS3AP52-201ENST00000435639 297 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AC245047.7-201ENST00000440265 293 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AL137792.2-201ENST00000443484 235 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AC107399.1-201ENST00000451226 265 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RNU7-87P-201ENST00000459343 62 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RPL39P28-201ENST00000465655 155 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AC091021.1-201ENST00000468051 388 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AC092989.1-201ENST00000481235 277 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AC022493.2-201ENST00000506122 481 ntBASIC0.83□□□□□ -2.28
RFX3P48380 SCARNA16.2-201ENST00000516520 172 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AC011604.1-201ENST00000545978 196 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.83□□□□□ -2.28
RFX3P48380 MIR4661-201ENST00000582720 75 ntBASIC0.83□□□□□ -2.28
RFX3P48380 AC005828.6-201ENST00000606610 232 ntBASIC0.83□□□□□ -2.28
RFX3P48380 RMST_2.1-201ENST00000617263 136 ntBASIC0.83□□□□□ -2.28
RFX3P48380 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
RFX3P48380 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.83□□□□□ -2.28
RFX3P48380 Y_RNA.86-201ENST00000363020 111 ntBASIC0.82□□□□□ -2.28
RFX3P48380 Y_RNA.267-201ENST00000364679 109 ntBASIC0.82□□□□□ -2.28
RFX3P48380 RNU6-1310P-201ENST00000384153 107 ntBASIC0.82□□□□□ -2.28
RFX3P48380 U8.16-201ENST00000391279 133 ntBASIC0.82□□□□□ -2.28
RFX3P48380 AC063976.4-201ENST00000421971 163 ntBASIC0.82□□□□□ -2.28
RFX3P48380 CALM2P4-201ENST00000430810 426 ntBASIC0.82□□□□□ -2.28
RFX3P48380 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.82□□□□□ -2.28
RFX3P48380 AC116353.2-201ENST00000505332 712 ntBASIC0.82□□□□□ -2.28
RFX3P48380 SNORD79.1-201ENST00000516069 84 ntBASIC0.82□□□□□ -2.28
RFX3P48380 Y_RNA.670-201ENST00000516255 105 ntBASIC0.82□□□□□ -2.28
RFX3P48380 AC013244.2-201ENST00000603396 103 ntBASIC0.82□□□□□ -2.28
RFX3P48380 AC211469.2-201ENST00000605461 205 ntBASIC0.82□□□□□ -2.28
RFX3P48380 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.82□□□□□ -2.28
RFX3P48380 AC093783.1-201ENST00000612976 329 ntBASIC0.82□□□□□ -2.28
RFX3P48380 AL357075.2-201ENST00000614906 189 ntBASIC0.82□□□□□ -2.28
RFX3P48380 AC127459.3-201ENST00000624328 466 ntBASIC0.82□□□□□ -2.28
RFX3P48380 U6.115-201ENST00000636045 103 ntBASIC0.82□□□□□ -2.28
RFX3P48380 MIR3674-201ENST00000636576 68 ntBASIC0.82□□□□□ -2.28
RFX3P48380 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
RFX3P48380 SNORA1B-201ENST00000362535 133 ntBASIC0.81□□□□□ -2.28
RFX3P48380 Y_RNA.72-201ENST00000362894 103 ntBASIC0.81□□□□□ -2.28
RFX3P48380 RNU1-36P-201ENST00000365130 165 ntBASIC0.81□□□□□ -2.28
RFX3P48380 RNU6-601P-201ENST00000384540 107 ntBASIC0.81□□□□□ -2.28
RFX3P48380 MIR489-201ENST00000384923 84 ntBASIC0.81□□□□□ -2.28
RFX3P48380 MIR548F5-201ENST00000408421 86 ntBASIC0.81□□□□□ -2.28
RFX3P48380 MIR548F1-201ENST00000408667 84 ntBASIC0.81□□□□□ -2.28
RFX3P48380 RNU5A-5P-201ENST00000411054 116 ntBASIC0.81□□□□□ -2.28
RFX3P48380 RPL39P39-201ENST00000455840 151 ntBASIC0.81□□□□□ -2.28
RFX3P48380 RNU6-625P-201ENST00000459412 107 ntBASIC0.81□□□□□ -2.28
RFX3P48380 RNU7-12P-201ENST00000516030 62 ntBASIC0.81□□□□□ -2.28
RFX3P48380 RNU6-947P-201ENST00000516264 106 ntBASIC0.81□□□□□ -2.28
RFX3P48380 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.81□□□□□ -2.28
RFX3P48380 RNA5SP361-201ENST00000362686 118 ntBASIC0.8□□□□□ -2.28
RFX3P48380 Y_RNA.339-201ENST00000365325 102 ntBASIC0.8□□□□□ -2.28
RFX3P48380 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.8□□□□□ -2.28
RFX3P48380 AC011352.1-201ENST00000512300 793 ntBASIC0.8□□□□□ -2.28
RFX3P48380 RNU6-718P-201ENST00000516166 105 ntBASIC0.8□□□□□ -2.28
RFX3P48380 RNU6-917P-201ENST00000516294 104 ntBASIC0.8□□□□□ -2.28
RFX3P48380 AC022868.1-201ENST00000517767 391 ntBASIC0.8□□□□□ -2.28
RFX3P48380 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.8□□□□□ -2.28
RFX3P48380 AC009229.3-201ENST00000608056 282 ntBASIC0.8□□□□□ -2.28
RFX3P48380 PISRT1.1-201ENST00000616930 107 ntBASIC0.8□□□□□ -2.28
RFX3P48380 MIR6767-201ENST00000637302 66 ntBASIC0.8□□□□□ -2.28
RFX3P48380 RNU6-874P-201ENST00000362390 105 ntBASIC0.79□□□□□ -2.28
RFX3P48380 Y_RNA.243-201ENST00000364481 109 ntBASIC0.79□□□□□ -2.28
RFX3P48380 RNU6-117P-201ENST00000365415 107 ntBASIC0.79□□□□□ -2.28
RFX3P48380 Y_RNA.358-201ENST00000365491 99 ntBASIC0.79□□□□□ -2.28
RFX3P48380 POLR2J4-204ENST00000418424 324 ntBASIC0.79□□□□□ -2.28
RFX3P48380 RPS29P1-201ENST00000465274 159 ntBASIC0.79□□□□□ -2.28
RFX3P48380 AL049830.1-201ENST00000468034 425 ntBASIC0.79□□□□□ -2.28
RFX3P48380 RPL17P19-201ENST00000489069 552 ntBASIC0.79□□□□□ -2.28
RFX3P48380 RPS26P48-201ENST00000491713 339 ntBASIC0.79□□□□□ -2.28
RFX3P48380 SNORA40.9-201ENST00000515895 93 ntBASIC0.79□□□□□ -2.28
RFX3P48380 MIR3973-201ENST00000579824 107 ntBASIC0.79□□□□□ -2.28
RFX3P48380 AC011712.1-201ENST00000588959 234 ntBASIC0.79□□□□□ -2.28
RFX3P48380 AC007014.2-201ENST00000615581 479 ntBASIC0.79□□□□□ -2.28
RFX3P48380 AC022709.1-201ENST00000615967 87 ntBASIC0.79□□□□□ -2.28
RFX3P48380 AC092794.2-201ENST00000620933 563 ntBASIC0.79□□□□□ -2.28
RFX3P48380 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.79□□□□□ -2.28
RFX3P48380 AC073869.6-201ENST00000640656 341 ntBASIC0.79□□□□□ -2.28
RFX3P48380 MIRLET7C-201ENST00000362160 84 ntBASIC0.78□□□□□ -2.28
RFX3P48380 RNU6-833P-201ENST00000363486 107 ntBASIC0.78□□□□□ -2.28
RFX3P48380 SNORD114-2-201ENST00000363953 78 ntBASIC0.78□□□□□ -2.28
RFX3P48380 SNORD114-24-201ENST00000365029 72 ntBASIC0.78□□□□□ -2.28
RFX3P48380 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms