Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.37□□□□□ -2.19
CDX1P47902 RNU6-155P-201ENST00000516347 100 ntBASIC1.37□□□□□ -2.19
CDX1P47902 RNU6-1291P-201ENST00000516591 104 ntBASIC1.37□□□□□ -2.19
CDX1P47902 AL365434.2-201ENST00000607979 234 ntBASIC1.37□□□□□ -2.19
CDX1P47902 AC006026.1-201ENST00000444025 1803 ntBASIC1.36□□□□□ -2.19
CDX1P47902 Y_RNA.5-201ENST00000362334 102 ntBASIC1.36□□□□□ -2.19
CDX1P47902 Y_RNA.252-201ENST00000364556 101 ntBASIC1.36□□□□□ -2.19
CDX1P47902 Y_RNA.315-201ENST00000365117 102 ntBASIC1.36□□□□□ -2.19
CDX1P47902 RNU6-505P-201ENST00000384427 107 ntBASIC1.36□□□□□ -2.19
CDX1P47902 Y_RNA.496-201ENST00000384444 101 ntBASIC1.36□□□□□ -2.19
CDX1P47902 MIR520G-201ENST00000385064 90 ntBASIC1.36□□□□□ -2.19
CDX1P47902 AL031003.1-201ENST00000404229 172 ntBASIC1.36□□□□□ -2.19
CDX1P47902 RN7SKP51-201ENST00000410781 304 ntBASIC1.36□□□□□ -2.19
CDX1P47902 SDAD1P3-201ENST00000427380 333 ntBASIC1.36□□□□□ -2.19
CDX1P47902 AL160004.2-201ENST00000432935 350 ntBASIC1.36□□□□□ -2.19
CDX1P47902 RPS29P11-201ENST00000496507 171 ntBASIC1.36□□□□□ -2.19
CDX1P47902 RNU6-1170P-201ENST00000515974 106 ntBASIC1.36□□□□□ -2.19
CDX1P47902 AP002004.2-201ENST00000531656 154 ntBASIC1.36□□□□□ -2.19
CDX1P47902 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.36□□□□□ -2.19
CDX1P47902 AC091178.2-201ENST00000584401 117 ntBASIC1.36□□□□□ -2.19
CDX1P47902 LARP7P1-201ENST00000605576 316 ntBASIC1.36□□□□□ -2.19
CDX1P47902 MIR502-201ENST00000606349 86 ntBASIC1.36□□□□□ -2.19
CDX1P47902 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.36□□□□□ -2.19
CDX1P47902 AC006157.1-201ENST00000611750 366 ntBASIC1.36□□□□□ -2.19
CDX1P47902 AL513423.1-201ENST00000621695 132 ntBASIC1.36□□□□□ -2.19
CDX1P47902 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CDX1P47902 Y_RNA.197-201ENST00000364004 102 ntBASIC1.35□□□□□ -2.19
CDX1P47902 Y_RNA.230-201ENST00000364348 109 ntBASIC1.35□□□□□ -2.19
CDX1P47902 RNU1-115P-201ENST00000365329 160 ntBASIC1.35□□□□□ -2.19
CDX1P47902 RNU6-117P-201ENST00000365415 107 ntBASIC1.35□□□□□ -2.19
CDX1P47902 Y_RNA.446-201ENST00000384178 104 ntBASIC1.35□□□□□ -2.19
CDX1P47902 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.35□□□□□ -2.19
CDX1P47902 AL049830.1-201ENST00000468034 425 ntBASIC1.35□□□□□ -2.19
CDX1P47902 AL163540.1-201ENST00000485382 386 ntBASIC1.35□□□□□ -2.19
CDX1P47902 RNU4-77P-201ENST00000516692 156 ntBASIC1.35□□□□□ -2.19
CDX1P47902 RNU7-28P-201ENST00000516759 62 ntBASIC1.35□□□□□ -2.19
CDX1P47902 RNU6-1096P-201ENST00000517089 102 ntBASIC1.35□□□□□ -2.19
CDX1P47902 RAB11AP2-201ENST00000545905 639 ntBASIC1.35□□□□□ -2.19
CDX1P47902 MIR5188-201ENST00000583467 113 ntBASIC1.35□□□□□ -2.19
CDX1P47902 Y_RNA.772-201ENST00000606692 102 ntBASIC1.35□□□□□ -2.19
CDX1P47902 AL078604.3-201ENST00000615580 211 ntBASIC1.35□□□□□ -2.19
CDX1P47902 AC091925.1-201ENST00000623204 462 ntBASIC1.35□□□□□ -2.19
CDX1P47902 AL606534.2-204ENST00000635008 178 ntBASIC1.35□□□□□ -2.19
CDX1P47902 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.35□□□□□ -2.19
CDX1P47902 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
CDX1P47902 SNORA1B-201ENST00000362535 133 ntBASIC1.34□□□□□ -2.19
CDX1P47902 Y_RNA.80-201ENST00000362996 102 ntBASIC1.34□□□□□ -2.19
CDX1P47902 Y_RNA.485-201ENST00000384395 102 ntBASIC1.34□□□□□ -2.19
CDX1P47902 AL627390.1-201ENST00000396055 340 ntBASIC1.34□□□□□ -2.19
CDX1P47902 RNA5SP511-201ENST00000410487 115 ntBASIC1.34□□□□□ -2.19
CDX1P47902 Y_RNA.621-201ENST00000411065 96 ntBASIC1.34□□□□□ -2.19
CDX1P47902 RPS27P16-201ENST00000425758 201 ntBASIC1.34□□□□□ -2.19
CDX1P47902 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.34□□□□□ -2.19
CDX1P47902 RNU6-1337P-201ENST00000516525 95 ntBASIC1.34□□□□□ -2.19
CDX1P47902 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.34□□□□□ -2.19
CDX1P47902 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.34□□□□□ -2.19
CDX1P47902 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.34□□□□□ -2.19
CDX1P47902 AL133255.1-201ENST00000606374 441 ntBASIC1.34□□□□□ -2.19
CDX1P47902 RNU1-17P-201ENST00000363022 152 ntBASIC1.33□□□□□ -2.2
CDX1P47902 RNU4-13P-201ENST00000364019 141 ntBASIC1.33□□□□□ -2.2
CDX1P47902 RNA5SP190-201ENST00000365222 118 ntBASIC1.33□□□□□ -2.2
CDX1P47902 Y_RNA.431-201ENST00000384086 102 ntBASIC1.33□□□□□ -2.2
CDX1P47902 MIR660-201ENST00000385235 97 ntBASIC1.33□□□□□ -2.2
CDX1P47902 RNA5SP482-201ENST00000391269 118 ntBASIC1.33□□□□□ -2.2
CDX1P47902 RPEP5-201ENST00000441137 268 ntBASIC1.33□□□□□ -2.2
CDX1P47902 SNORA40.14-201ENST00000516543 86 ntBASIC1.33□□□□□ -2.2
CDX1P47902 RNA5SP168-201ENST00000516642 112 ntBASIC1.33□□□□□ -2.2
CDX1P47902 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.33□□□□□ -2.2
CDX1P47902 AC106754.2-201ENST00000623006 233 ntBASIC1.33□□□□□ -2.2
CDX1P47902 RNU6-1175P-201ENST00000365200 107 ntBASIC1.32□□□□□ -2.2
CDX1P47902 Y_RNA.361-201ENST00000365515 120 ntBASIC1.32□□□□□ -2.2
CDX1P47902 Y_RNA.526-201ENST00000384572 110 ntBASIC1.32□□□□□ -2.2
CDX1P47902 SNORA12.1-201ENST00000390873 148 ntBASIC1.32□□□□□ -2.2
CDX1P47902 SNORA67.5-201ENST00000391036 107 ntBASIC1.32□□□□□ -2.2
CDX1P47902 RNU6-955P-201ENST00000410497 104 ntBASIC1.32□□□□□ -2.2
CDX1P47902 RNU5A-5P-201ENST00000411054 116 ntBASIC1.32□□□□□ -2.2
CDX1P47902 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.32□□□□□ -2.2
CDX1P47902 MTND1P14-201ENST00000427400 950 ntBASIC1.32□□□□□ -2.2
CDX1P47902 HSPE1P13-201ENST00000451143 297 ntBASIC1.32□□□□□ -2.2
CDX1P47902 RNU6-436P-201ENST00000516171 114 ntBASIC1.32□□□□□ -2.2
CDX1P47902 RN7SKP295-201ENST00000517264 153 ntBASIC1.32□□□□□ -2.2
CDX1P47902 MIR4778-201ENST00000577635 80 ntBASIC1.32□□□□□ -2.2
CDX1P47902 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.32□□□□□ -2.2
CDX1P47902 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.32□□□□□ -2.2
CDX1P47902 PRR13P7-201ENST00000605538 430 ntBASIC1.32□□□□□ -2.2
CDX1P47902 AL080274.1-201ENST00000605565 220 ntBASIC1.32□□□□□ -2.2
CDX1P47902 AC022441.3-201ENST00000605737 136 ntBASIC1.32□□□□□ -2.2
CDX1P47902 AC005592.1-201ENST00000566527 1640 ntBASIC1.32□□□□□ -2.2
CDX1P47902 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
CDX1P47902 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
CDX1P47902 RNA5SP99-201ENST00000364020 114 ntBASIC1.31□□□□□ -2.2
CDX1P47902 RNU4-76P-201ENST00000364509 141 ntBASIC1.31□□□□□ -2.2
CDX1P47902 RNY1P14-201ENST00000384426 108 ntBASIC1.31□□□□□ -2.2
CDX1P47902 RNU6-1199P-201ENST00000411249 104 ntBASIC1.31□□□□□ -2.2
CDX1P47902 RPL23AP36-201ENST00000413895 458 ntBASIC1.31□□□□□ -2.2
CDX1P47902 AL354751.2-201ENST00000415471 210 ntBASIC1.31□□□□□ -2.2
CDX1P47902 RPL30P13-201ENST00000418873 348 ntBASIC1.31□□□□□ -2.2
CDX1P47902 CALM2P4-201ENST00000430810 426 ntBASIC1.31□□□□□ -2.2
CDX1P47902 OR9P1P-201ENST00000496431 281 ntBASIC1.31□□□□□ -2.2
CDX1P47902 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 282.3 ms